Gene
| Gene Model ID | pfu_aug2.0_4.1_13311 |
|---|---|
| Locus | scaffold4.1 : 102477 ... 116545 : - |
| To GenomeBrowser | scaffold4.1:102477..116545 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_12806.1_03281 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13311.t1 | 1 | 1 | TIR_2 | 33 | 141 | 8.8e-12 | 45.0 | 4.2e-15 | 2.1e-11 | 43.8 |
| pfu_aug2.0_4.1_13311.t1 | 5 | 1 | zf-TRAF | 270 | 304 | 1.2e-10 | 41.5 | 0.00029 | 1.4 | 9.3 |
| pfu_aug2.0_4.1_13311.t1 | 5 | 2 | zf-TRAF | 304 | 360 | 1.2e-10 | 41.5 | 9.6e-12 | 4.7e-08 | 33.2 |
| pfu_aug2.0_4.1_13311.t1 | 5 | 3 | zf-TRAF | 381 | 430 | 1.2e-10 | 41.5 | 1.5e-05 | 0.075 | 13.4 |
| pfu_aug2.0_4.1_13311.t1 | 5 | 4 | zf-TRAF | 402 | 457 | 1.2e-10 | 41.5 | 7.1e-08 | 0.00035 | 20.8 |
| pfu_aug2.0_4.1_13311.t1 | 5 | 5 | zf-TRAF | 457 | 488 | 1.2e-10 | 41.5 | 0.47 | 2300.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13311.t1 | gi|118365674|ref|XP_001016057.1| | 2.0e-09 | |
| pfu_aug2.0_4.1_13311.t1 | gi|673020838|ref|XP_008864380.1| | hypothetical protein H310_02596 [Aphanomyces invadans] | 1.0e-07 |
| pfu_aug2.0_4.1_13311.t1 | gi|255086757|ref|XP_002509345.1| | predicted protein [Micromonas sp. RCC299] | 1.0e-07 |
| pfu_aug2.0_4.1_13311.t1 | gi|255073945|ref|XP_002500647.1| | predicted protein [Micromonas sp. RCC299] | 2.0e-07 |
| pfu_aug2.0_4.1_13311.t1 | gi|156384771|ref|XP_001633306.1| | predicted protein [Nematostella vectensis] | 5.0e-07 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13311.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13311.t1 atgaccatgttatctggcattcagtcaacgatgagttccataccgaagaatttttccagttcttcgccaacaaaaaagac caaaattcctcgccgaatctttgtatcgtacgcacattcagactccgtgacggtaaatctgatcttggatgtacttcgaa actctggctgtaagatatgggatccggagggagattccatcccgggaacatacatcttgcagaatttcattgatttcgga atcgacaaaacaaacactgcagttttattcatcacgaaaaatttcctttccgacagcttttgcacattcctgggaaacca tgttatagggaaatacatcagaacagaggggcggtaccgtgtgataccggtcctgctggagaactgtaaattaccgtact accttaagtcggtgaattgtatctctctttggaggtataaaaggcagatagatctgaacaacgatcacgctgaagagtat atcgtgagggccttgtcacgaatactaaaggctatttcttcaccatcaaattcgttttggaaaatccaccgctctggaag taaaatcatcacacatggaggacggattatccacgatgttctgcagtttggtcataaactcttgtcacgcggtagaaaaa tgggaagaggggttcgggaatatatgcaaaaagaaagacttaaacgaagcattcctaaagcaaacaaatttaatcccatc aacctgctgaaaatggcagcttcgttaaaacattgtttgataagttgtaggtatggcagttgtacgtttcagacttatgg ccccgaatatgcaaaattccacgaacacttgcaaatctgtaaatttgtcccagttcattgcaagtacaagggttgtaatg tagtcgcaaggcggcatgagatgtgcaaacacgaaaagaaatgtccgtttattccaatggagtgtccaaatgatggttgt aaggttaagaaagctctgtgttttctcgacgaacacatgaatcaatgcaaacatgctctggtaccctgtccattaaaggg atgcaaggtaagcgtgaaagtaaaagacttcaattcgcaccgatcagtgtgcgagtttcgcacaatagagatggactcgg actcagtgccagtattttcaaaattctcatgtccaaacaaagactgcgaagaaacgtttcacacgaaacagggattaaga atgcacagtactatttgtccgtatgccataataacatgtccaaatacattctgtgactataagaacaccatggcaagagt ggagagacacagagctgtagagtgtgattacagggacgttaaatgtcgggtgtgtttccaggtattaccaatgaaacact tagatcaacacaaactgacgtgtgaagctaaaataaagtgtgaaaattgtggccttcaaattcggagctcgtcgaaaaaa tatcacaatcaacattgtggaaagaatttcatgacctatttcaccagagaagattgtcgaggtagacatgtaacatcaca gagtaccgaatcgtcagcttcaacaaactgcaaggaaaggcatttcacagaaatctcacatagaagagttacaagtgcgc cttcgaagaacagcaacagggaattcgttttccttgttaacataacaaaaaagcagatcaaatcctatctggacataatg ttgtcctacgacaataatggtcacttgaacacctcactcggtgacaaacgtgacgacttcaatttcaacatcacaaactt tccttttctgagaagcagcatttcttcatcgcctgcttattgcgtgttcatatctcagttgatacgctttgccagagcaa gtacagatttgattctgagagctaagcgtctttcaaataagcttctcagtcagggatacgtttgtggccgactaacctcg gaagatctacggtcgatatggggaactcgtcatacatttgatgttccactctccagaatggtggacgatattctgtctta g |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13311.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13311.t1 MTMLSGIQSTMSSIPKNFSSSSPTKKTKIPRRIFVSYAHSDSVTVNLILDVLRNSGCKIWDPEGDSIPGTYILQNFIDFG IDKTNTAVLFITKNFLSDSFCTFLGNHVIGKYIRTEGRYRVIPVLLENCKLPYYLKSVNCISLWRYKRQIDLNNDHAEEY IVRALSRILKAISSPSNSFWKIHRSGSKIITHGGRIIHDVLQFGHKLLSRGRKMGRGVREYMQKERLKRSIPKANKFNPI NLLKMAASLKHCLISCRYGSCTFQTYGPEYAKFHEHLQICKFVPVHCKYKGCNVVARRHEMCKHEKKCPFIPMECPNDGC KVKKALCFLDEHMNQCKHALVPCPLKGCKVSVKVKDFNSHRSVCEFRTIEMDSDSVPVFSKFSCPNKDCEETFHTKQGLR MHSTICPYAIITCPNTFCDYKNTMARVERHRAVECDYRDVKCRVCFQVLPMKHLDQHKLTCEAKIKCENCGLQIRSSSKK YHNQHCGKNFMTYFTREDCRGRHVTSQSTESSASTNCKERHFTEISHRRVTSAPSKNSNREFVFLVNITKKQIKSYLDIM LSYDNNGHLNTSLGDKRDDFNFNITNFPFLRSSISSSPAYCVFISQLIRFARASTDLILRAKRLSNKLLSQGYVCGRLTS EDLRSIWGTRHTFDVPLSRMVDDILS |
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