Gene
| Gene Model ID | pfu_aug2.0_4.1_13314 |
|---|---|
| Locus | scaffold4.1 : 152696 ... 166268 : + |
| To GenomeBrowser | scaffold4.1:152696..166268 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_1271.1_51246 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor rfx3 isoform x2 | GO:0003323 GO:0005634 GO:0044212 GO:0045893 GO:0048469 GO:0050796 GO:0060285 GO:0060287 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13314.t1 | 1 | 1 | RFX_DNA_binding | 154 | 233 | 2.0e-36 | 124.0 | 7.2e-40 | 5.4e-36 | 122.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13314.t1 | gi|676482182|ref|XP_009062615.1| | hypothetical protein LOTGIDRAFT_235257 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13314.t1 | gi|524892541|ref|XP_005102798.1| | PREDICTED: transcription factor RFX3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_4.1_13314.t1 | gi|390357206|ref|XP_790942.3| | PREDICTED: transcription factor RFX3 isoform X5 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_4.1_13314.t1 | gi|686730424|ref|XP_009242755.1| | PREDICTED: transcription factor RFX3 isoform X2 [Pongo abelii] | 0.0 |
| pfu_aug2.0_4.1_13314.t1 | gi|591337255|ref|XP_007094226.1| | PREDICTED: transcription factor RFX3 isoform X3 [Panthera tigris altaica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13314.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13314.t1 atggcaacccagacatttgtgacagatctccaagcaatgaaccctacagtcgtccaagtgcaggtatgtttgctactaca atacccgtttttgaaccttgttccagatcagctgagcggagaaggcagcaacggacaagacggagtgacgatacagcagg gaggacaaacagtgtatccagctcatgttcagtatgtagacggctctgatcctggtatctacgcatctacaaatggtcaa atgcaaaatgcctaccagacggagtacggacagacaatgtatacacctgtatcaggtacttactaccagacaggatctca gcaggtgggcagtggtgtcactcagcttggggtacagacggtacagggacagattgtacagcatcaggggggcacttacc ttatacagggagggaccatggatggagagggtaccccacttacacacacaacaagagcctctccagccacagttcagtgg ctgatagacaactatgagactgcagagggagttagcttaccccgaagcactctgtataatcactatttacgacattgtac agaacagtctctggaccccatgaatcctgcttcatttggtaaactcatacgatcagtatttcttggactacgcacacgca gactgggcacaaggggcaattcaaagtatcactattatggcataaggattaaggcaaactccccccttaatcaattcaca gatgatcaaacaatggcaatgagacagcagcctatgtaccaagggaaaaacaaaggggaatctgactctgagagtggaca tggtcacccaggacagattgaccaggctacagcacagcagcagcagcatcagcagttcctaggtgacgcttccgcagctc tgccaaactttggtgatatagacatgtcagctccgttacctgagggagtcactgcagatcatgtccgtgccttcgagaag atgtacagagaacatgctgaggccatagtagatgtagttgtgaatttgcagttttctctcatcgaagctctatggcaagg gttttggcgaaaccagcctcctgatcaactcactgctgataatgattatgagaagcgccttcccaaggacaagttatatg ctgtcagtggatatgaggctgtacaagaatatgttagacgagctgattatacattttatcaagccttagtagaagtccta attcctgatgtactccgcccaattcctagctcattaactcaagctataaggaactttgccaagagtttggagaattggtt aaaaggtgccatgacgggtgtaccagagggaatgatcaagactaaggtcagtgcggttagcgccttcgctcagactttac gtcgatacacatcactgaatcaccttgctcaggctgctagggcagtattacagaatacatcacagatcaaccaaatgttg accgatctcaatagggtggactttgcaaatgtacaagaacaggcatcatgggtatgtcagtgtgaagacgctgtagtaca acagttacaagaagattttaagaaaacacttgagtcccagaattcacttgaacagtgggcagtttggttagagggtgtgg tcaatcaggtcctcaagcctcatgaagggagtgacaatttccctaaggcagctcgacagtttcttctgaaatggtcattt tatagttctatggtgattcgagacttgacactgcgcagtgctgctagttttggatcttttcacttgatccgccttttata tgatgaatacatgttttatctggtggaacataaagtagcagcagccactggggaaacacctatagctgtcatgggtgaag tcagacagttcatagatttgagcagtgctgtcctgatgagtaacctagaagctgagactaagccaaatgttatcaccaaa gcccctcccacctcagtgaacgctacatcaggtacatctatactgaacaaagtggacagtgcccagagctcggccactac cttgatggtcctctctaactcgggtacaaccagtaacgccgtcaatggtagccttatagtcacctcggcccctggaacta acgcctccacagtaacggtcagagcagctaacacccccatacagggggccaagaccattgtagtcatgccagtgtccagc tccataggctcaggggatggacagaacaaaagattaaaggtggaataa |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13314.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13314.t1 MATQTFVTDLQAMNPTVVQVQVCLLLQYPFLNLVPDQLSGEGSNGQDGVTIQQGGQTVYPAHVQYVDGSDPGIYASTNGQ MQNAYQTEYGQTMYTPVSGTYYQTGSQQVGSGVTQLGVQTVQGQIVQHQGGTYLIQGGTMDGEGTPLTHTTRASPATVQW LIDNYETAEGVSLPRSTLYNHYLRHCTEQSLDPMNPASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRIKANSPLNQFT DDQTMAMRQQPMYQGKNKGESDSESGHGHPGQIDQATAQQQQHQQFLGDASAALPNFGDIDMSAPLPEGVTADHVRAFEK MYREHAEAIVDVVVNLQFSLIEALWQGFWRNQPPDQLTADNDYEKRLPKDKLYAVSGYEAVQEYVRRADYTFYQALVEVL IPDVLRPIPSSLTQAIRNFAKSLENWLKGAMTGVPEGMIKTKVSAVSAFAQTLRRYTSLNHLAQAARAVLQNTSQINQML TDLNRVDFANVQEQASWVCQCEDAVVQQLQEDFKKTLESQNSLEQWAVWLEGVVNQVLKPHEGSDNFPKAARQFLLKWSF YSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFYLVEHKVAAATGETPIAVMGEVRQFIDLSSAVLMSNLEAETKPNVITK APPTSVNATSGTSILNKVDSAQSSATTLMVLSNSGTTSNAVNGSLIVTSAPGTNASTVTVRAANTPIQGAKTIVVMPVSS SIGSGDGQNKRLKVE |
|