Gene
| Gene Model ID | pfu_aug2.0_4.1_13316 |
|---|---|
| Locus | scaffold4.1 : 179566 ... 182499 : + |
| To GenomeBrowser | scaffold4.1:179566..182499 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_1271.1_51248 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 39s ribosomal protein mitochondrial | GO:0005634 GO:0005739 GO:0005840 GO:0070013 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13316.t1 | 1 | 1 | Mitoc_L55 | 15 | 115 | 1.5e-34 | 118.0 | 2.3e-38 | 1.7e-34 | 117.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13316.t1 | gi|675847076|ref|XP_009009098.1| | hypothetical protein HELRODRAFT_63394, partial [Helobdella robusta] | 9.0e-25 |
| pfu_aug2.0_4.1_13316.t1 | gi|118783438|ref|XP_312991.3| | AGAP004113-PA [Anopheles gambiae str. PEST] | 2.0e-24 |
| pfu_aug2.0_4.1_13316.t1 | gi|241620364|ref|XP_002408652.1| | ribosomal protein L55, putative [Ixodes scapularis] | 3.0e-24 |
| pfu_aug2.0_4.1_13316.t1 | gi|157112355|ref|XP_001651805.1| | AAEL006118-PA [Aedes aegypti] | 3.0e-23 |
| pfu_aug2.0_4.1_13316.t1 | gi|558111759|ref|XP_006112132.1| | PREDICTED: 39S ribosomal protein L55, mitochondrial [Pelodiscus sinensis] | 2.0e-21 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13316.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13316.t1 atgaattgttcgagggaacttttcctgattttgcggcagaatgtgaaggctgtccaacagattccgtgccgctgtagctc caacagggtagccattactaccaccaaacgtgatatgtatgtacgtcagtatcctaccacaatagtactgcccaatggag ctaccatccaggccagatacaaagaaccacggcagatcatcaagctaccaattgatatttcaacattgacagaggaagaa ttggaagctttaaaaagaaaaaggaaaccaaaggaagtatttgtggaggaaaaagaaatagaagactcatttgataaaaa taaatattcaaaatactggaaaagataa |
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Protein
| Protein ID | pfu_aug2.0_4.1_13316.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13316.t1 MNCSRELFLILRQNVKAVQQIPCRCSSNRVAITTTKRDMYVRQYPTTIVLPNGATIQARYKEPRQIIKLPIDISTLTEEE LEALKRKRKPKEVFVEEKEIEDSFDKNKYSKYWKR |
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