Gene
| Gene Model ID | pfu_aug2.0_4.1_13321 |
|---|---|
| Locus | scaffold4.1 : 240286 ... 249430 : + |
| To GenomeBrowser | scaffold4.1:240286..249430 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13321.t1 | 1 | 1 | RINGv | 56 | 107 | 6.5e-13 | 48.5 | 6.5e-16 | 1.2e-12 | 47.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13321.t1 | gi|676477653|ref|XP_009061174.1| | hypothetical protein LOTGIDRAFT_234708 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13321.t1 | gi|524894149|ref|XP_005103577.1| | PREDICTED: E3 ubiquitin-protein ligase MARCH4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_4.1_13321.t1 | gi|241566028|ref|XP_002402075.1| | E3 ubiquitin protein ligase MARCH8, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_4.1_13321.t1 | gi|71982326|ref|NP_490710.2| | MARC-4 [Caenorhabditis elegans] | 2.0e-27 |
| pfu_aug2.0_4.1_13321.t1 | gi|308497911|ref|XP_003111142.1| | hypothetical protein CRE_03824 [Caenorhabditis remanei] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13321.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13321.t1 atgaacgaggcacccgaccctaaccagaccctggctcagctagccagctctaacatcactatagccagtatcagaaccat cggtagtgcgaaccttactccactaccccagaagaagtttatatcacgggaggggtcagtatgtggtacagatatcctcc ctatctgcaggatatgtcagctacccggggacatgactgaccctctattctcaccatgtaggtgtgctggatccctcaga tacattcactacacctgtctgaagaggtggatagaaatttgtacacgtaaaactcggaagccacctagatgtgagctgtg tcattatcagttccatagacataagaagtttaggttcaggaattggcgatggccacgcgtgaacaatagagacaaatgcc ttcatataatattcctcatcaatctactcatcatgttggggtgtgccatagccacgatcatgtgtttcctgtccgacaag gggcagataaccaagtttccgaagaatcaaatcaagttaactacggaagaggtgattacactggcctgtggtgtcatgtt ctttgtggccttcttcatcgccatgacggtggagattaaagccaaacatacagtctacaagttgtgtatgagatttgtga tgcaaaatactgaatgggccgtcgacgcatacgaccgcaaaaaggaccctgggtaccatggacctgcgacatatgtgtaa |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13321.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13321.t1 MNEAPDPNQTLAQLASSNITIASIRTIGSANLTPLPQKKFISREGSVCGTDILPICRICQLPGDMTDPLFSPCRCAGSLR YIHYTCLKRWIEICTRKTRKPPRCELCHYQFHRHKKFRFRNWRWPRVNNRDKCLHIIFLINLLIMLGCAIATIMCFLSDK GQITKFPKNQIKLTTEEVITLACGVMFFVAFFIAMTVEIKAKHTVYKLCMRFVMQNTEWAVDAYDRKKDPGYHGPATYV |
|