Gene
| Gene Model ID | pfu_aug2.0_4.1_13322 |
|---|---|
| Locus | scaffold4.1 : 249432 ... 276545 : - |
| To GenomeBrowser | scaffold4.1:249432..276545 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_1271.1_51251 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-binding cassette sub-family d member 3 isoform x2 | GO:0005524 GO:0005743 GO:0005778 GO:0005782 GO:0006635 GO:0007031 GO:0014070 GO:0015910 GO:0016021 GO:0042493 GO:0042626 GO:0042760 GO:0042803 GO:0043621 GO:0055085 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13322.t1 | 2 | 1 | ABC_membrane_2 | 93 | 190 | 0.0 | 221.5 | 1.7e-26 | 2.5e-23 | 82.6 |
| pfu_aug2.0_4.1_13322.t1 | 2 | 2 | ABC_membrane_2 | 193 | 322 | 0.0 | 221.5 | 9.80909e-45 | 1.49995e-41 | 142.3 |
| pfu_aug2.0_4.1_13322.t1 | 1 | 1 | ABC_tran | 439 | 581 | 7.8e-18 | 65.0 | 1.1e-20 | 1.6e-17 | 64.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13322.t1 | gi|676477650|ref|XP_009061173.1| | hypothetical protein LOTGIDRAFT_206931 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13322.t1 | gi|260832203|ref|XP_002611047.1| | hypothetical protein BRAFLDRAFT_115732 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_4.1_13322.t1 | gi|585717709|ref|XP_006825744.1| | PREDICTED: ATP-binding cassette sub-family D member 3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_4.1_13322.t1 | gi|620962884|ref|XP_001511038.3| | PREDICTED: ATP-binding cassette sub-family D member 3 [Ornithorhynchus anatinus] | 0.0 |
| pfu_aug2.0_4.1_13322.t1 | gi|533140689|ref|XP_005385054.1| | PREDICTED: ATP-binding cassette sub-family D member 3 isoform X1 [Chinchilla lanigera] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13322.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13322.t1 atgtaccttgtttttacagatgtaaatatattgatcagctttagaatcaagttgacggctcgcaagtcggtcgtcatcac tgggggtgtagttgccgcatttgttgcctacaaaaaccttgtggcaaaacggaggaaaggaactaaggaggagattaaag ttgtcatccatgaggcgattatggaggatcttgaaggttctgattcctggctggtttacggcagaggtaaatatcataga tatcatatgaaggttccgattcctggctggtttacagcagaggttctgattcctgactggtttacagcagaggcctggtt tatgatattggtggctgcatcgttaatactcagaacatacgctgatgtctggatgatacagaatggcacagccattgaaa gtgcaatcattggacgagatatgtcactcttcaaagttcatctgtttaaattcatctacgccatgcctatgatatctgtg ataaacaattcactgaagtatggattgaatgagctgaaactgagattccgaaccagactgacacgatatctgtttgataa gtatctcaaatacatgtatcctttgttagatatctgcctgtacacctccaagcttgcatcaagtattggattccagggtc ctgtgataatgttgggatacttagctgtttccggtgccatactcacaaggttgcgtagacctgttggtagatacacagtg aaagaacaaaagttggaaggagaatacagatttgtcaactcccgtctcatcactaacagtgaagaagtagcattttacca gggaaacaaaagagaacagttcatcatcttagcgacattcaacaaattagtagatcatcttcgagatttcattttcttcc gtcttcaaatgggatttgttgacaacataatcgccaaatacattgccacagtatttggttaccttgttgtgagcagacct ttcctagacttggctcatcccagacatctgacaagctcacacagtgaaagactggaggattactacaagagtgggcgcat gttggtgagaatggcagaggctattggtcgtattgtccttgcaggcagggagatgaccaggctggcaggattcacagccc gtataaccgaactaatgcatgttctggatgacttgaacaaaggccagtatcagagaaccatggtgtctgaccaatcaaat ggcaagagtgcaaagaagacatttaaaccaggtgatggagttattaaaaatgaggactatgtcataaggtttgagaaagt tccattggtgactccaaatggagatgttctgatagaagaaatgaactttgaggtgagatctggtatgaatgtactggtat gtggacctaatggttgtggtaaaagctctctcttcagagtattaggagagttatggcccttgtttggaggaaagatgaca aagccagagaaaggcaaactgttctatgtacctcaaagaccatatatgacagtgggcacactaagagaccaggtgatcta tccagactctcacaatgaacagttaaagaaaggcatacaagactcacaactacaggatatactccaaaaggtacagctgg agtacattctagaaagagaaggtggctgggattctgtacaggactggatggatgtacttagtggtggagagaaacagaga attgcaatggcccgtttgttctaccatcgaccacagtttgccattttagatgaatgtacgagtgccgttagtgtagatgt agaaggattcatgtaccagtactgtagagaggttggcatatcattatttacagtatcacacagaaagtctctctggaagc atcatgaggtaaatacattggcgccctaa |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13322.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13322.t1 MYLVFTDVNILISFRIKLTARKSVVITGGVVAAFVAYKNLVAKRRKGTKEEIKVVIHEAIMEDLEGSDSWLVYGRGKYHR YHMKVPIPGWFTAEVLIPDWFTAEAWFMILVAASLILRTYADVWMIQNGTAIESAIIGRDMSLFKVHLFKFIYAMPMISV INNSLKYGLNELKLRFRTRLTRYLFDKYLKYMYPLLDICLYTSKLASSIGFQGPVIMLGYLAVSGAILTRLRRPVGRYTV KEQKLEGEYRFVNSRLITNSEEVAFYQGNKREQFIILATFNKLVDHLRDFIFFRLQMGFVDNIIAKYIATVFGYLVVSRP FLDLAHPRHLTSSHSERLEDYYKSGRMLVRMAEAIGRIVLAGREMTRLAGFTARITELMHVLDDLNKGQYQRTMVSDQSN GKSAKKTFKPGDGVIKNEDYVIRFEKVPLVTPNGDVLIEEMNFEVRSGMNVLVCGPNGCGKSSLFRVLGELWPLFGGKMT KPEKGKLFYVPQRPYMTVGTLRDQVIYPDSHNEQLKKGIQDSQLQDILQKVQLEYILEREGGWDSVQDWMDVLSGGEKQR IAMARLFYHRPQFAILDECTSAVSVDVEGFMYQYCREVGISLFTVSHRKSLWKHHEVNTLAP |
|