Gene
| Gene Model ID | pfu_aug2.0_4.1_13334 |
|---|---|
| Locus | scaffold4.1 : 451019 ... 483390 : - |
| To GenomeBrowser | scaffold4.1:451019..483390 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_2963.1_59078 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-binding cassette sub-family a member 1 isoform x2 | GO:0005215 GO:0044765 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13334.t1 | 4 | 1 | Mpv17_PMP22 | 112 | 179 | 1.3e-25 | 88.7 | 9.0e-29 | 1.3e-25 | 88.7 |
| pfu_aug2.0_4.1_13334.t1 | 6 | 1 | AAA_21 | 463 | 537 | 1.0e-20 | 74.8 | 3.3 | 4900.0 | -2.9 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 1 | ABC2_membrane_3 | 609 | 736 | 4.0e-10 | 39.2 | 0.87 | 1300.0 | -1.9 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 2 | Mpv17_PMP22 | 754 | 763 | 1.3e-25 | 88.7 | 7.1 | 11000.0 | -3.9 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 2 | ABC2_membrane_3 | 776 | 889 | 4.0e-10 | 39.2 | 0.053 | 79.0 | 2.1 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 3 | Mpv17_PMP22 | 821 | 839 | 1.3e-25 | 88.7 | 3.9 | 5800.0 | -3.0 |
| pfu_aug2.0_4.1_13334.t1 | 3 | 1 | ABC_tran | 1006 | 1037 | 9.0e-38 | 129.6 | 7.7e-08 | 0.00011 | 22.4 |
| pfu_aug2.0_4.1_13334.t1 | 6 | 2 | AAA_21 | 1017 | 1036 | 1.0e-20 | 74.8 | 0.052 | 77.0 | 3.0 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 4 | Mpv17_PMP22 | 1043 | 1059 | 1.3e-25 | 88.7 | 5.1 | 7600.0 | -3.4 |
| pfu_aug2.0_4.1_13334.t1 | 3 | 2 | ABC_tran | 1052 | 1105 | 9.0e-38 | 129.6 | 5.5e-10 | 8.1e-07 | 29.4 |
| pfu_aug2.0_4.1_13334.t1 | 6 | 3 | AAA_21 | 1060 | 1133 | 1.0e-20 | 74.8 | 7.0e-12 | 1.0e-08 | 35.4 |
| pfu_aug2.0_4.1_13334.t1 | 6 | 4 | AAA_21 | 1601 | 1673 | 1.0e-20 | 74.8 | 1.9 | 2800.0 | -2.1 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 3 | ABC2_membrane_3 | 1623 | 1773 | 4.0e-10 | 39.2 | 4.0e-09 | 5.9e-06 | 25.5 |
| pfu_aug2.0_4.1_13334.t1 | 4 | 4 | ABC2_membrane_3 | 1772 | 1895 | 4.0e-10 | 39.2 | 7.7e-08 | 0.00011 | 21.3 |
| pfu_aug2.0_4.1_13334.t1 | 3 | 3 | ABC_tran | 1955 | 2096 | 9.0e-38 | 129.6 | 1.4e-23 | 2.0e-20 | 73.4 |
| pfu_aug2.0_4.1_13334.t1 | 6 | 5 | AAA_21 | 1967 | 1985 | 1.0e-20 | 74.8 | 0.016 | 24.0 | 4.7 |
| pfu_aug2.0_4.1_13334.t1 | 6 | 6 | AAA_21 | 2069 | 2126 | 1.0e-20 | 74.8 | 9.2e-10 | 1.4e-06 | 28.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13334.t1 | gi|512813569|ref|XP_004910916.1| | PREDICTED: ATP-binding cassette sub-family A member 1 isoform X1 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_4.1_13334.t1 | gi|597731471|ref|XP_007228101.1| | PREDICTED: ATP-binding cassette sub-family A member 1 isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_4.1_13334.t1 | gi|617438734|ref|XP_007564335.1| | PREDICTED: ATP-binding cassette sub-family A member 1-like [Poecilia formosa] | 0.0 |
| pfu_aug2.0_4.1_13334.t1 | gi|528499257|ref|XP_005173137.1| | PREDICTED: ATP-binding cassette, sub-family A (ABC1), member 1B isoform X1 [Danio rerio] | 0.0 |
| pfu_aug2.0_4.1_13334.t1 | gi|658902864|ref|XP_008434193.1| | PREDICTED: ATP-binding cassette sub-family A member 1-like [Poecilia reticulata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13334.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13334.t1 atgctaaagtcacttttttctcgacatctctggattacaaacactgtggcatcaggtagtctgttgggacttggagatct catcacacagaatattgaaattcgttatgctagatctaaagaatcggataaaccccaaaagcgtcatatagattggaaaa gagcagggcggatgcttactgttggaataacactaggtccagttggccatctttggtatagccatttagtcgacaagctt gtcaagggagcaggcgtgaaagccacactgaaaaaaatactggcagatcaaacatttgcaggaccattcttttgtagttt cttctttttgggaatgaatcttcttgagggaaaaggacttaacgctggtgtagaggaggttaaagaaaaatttctgactg tttatttgatggactggattatttggccaccagctcagttcatcaactttcagtatttaccagtaaagtacagaatggtc tatgtgtcctttctcacattatgttggaacactattctctcatatatcaaacataaggaatctttcaagggagtaacgtt ggagaagataaaagaaaaatttgttctcttttttcctgctgaaattaaaggtttcatcatgggatttggaaaccaattga ggattttactttggaaaaattatacactgagaaaaagacaaaagtaccgtctcctggcagagattttgactccactggtg ctatttttggtgctagttatcgtgaggacacgtcctgacatcatcacatatcactcagaatgtcatttcgatggtaaggc attgcccagtgctggattaattccctttctccaatcatttttctgtacatttaacaacacatgtcatgaaacggtcactc cagacgaaatgcagggaaattttggtaactacaaacagtctgtgataactcaaattttagaagacatagaagcagtatta aatgataatattgacagaaagttgatcatggatctcctatcagactgggatatactgactatgctggccaagaaaattaa ccaaggctcaaccaaaggtggtgtaagggttggtacagtgttggggaatccccagaatgtcagtaatgaggtgaaggcca agaagatcaacttctcaatcaaaagtctgatacaacttatgaatgctaccatggacttcaaccagctgaacaagcctgcc ttaagcaaactgttacaagactttgacctttgtccccactcggaagaggtatcaacaggagtaagcctggagatctggga catcgtttgtacctcagggagtgtcctacacgccctacagttccatcccccagaggccaaggataccgtgaagaaagagc tttgtagtctgagtactacagaactacagcatctgtataaggccatcaaaaatcaatacagcatcaaacgattctttatg caggcaaacaggacgttttcagaccttgctcggattgtaaagcttgccaatgactgggatggatactcagattttatccg agaccatttcgctaatagtcctacatatgacctacttaggacattttcgggatcctgtctctgtgattatgtggaggaat ttacccgtaaatccatgggtaagcggaatagtcacagtatatgtcacttcctgaatactttgttaaacggtaaacctgag ttcggagagatgaactggatggaagtgttaagcttcactaagtctgcagctcggatagtagctgattacggaaagtgttt cacgtttgacaaatttgttggatttccagacgaagaatctctattgcgagagagtgctaagatgatagaaaacaatactt tatggggagccctggtgtttgatgttgacccagagaaacactacagtgaacttccaacgcatgtgaaatataagataagg atggactcagatagagtggaacccacggatagagtcagagcgagttcctggagacctggacctcgccgagcaccaggaaa ggagaccaagtttctaagttacggctttgcctacctacaggacatggtggaccatgctataataaagatccagacaggag ctgatacagatataggggtggttgtacagcagttcccttatccttgttatatacaagacacatttcagtatgccatagac agagtgttgccattgttccttgtactggcctgggtgttttctgtagctatgatatgaagtgatgaggattatgggattgg ggaatggagtacactgggtagcgtggtttatcaatgctttctttgttatgatgattaccatcagtatactgactgttgca ctcaagctaccatcatgcagtgttttctgttcagcgtgtttttctcccacgctaaccttgccgcatgctgtgccgggttt ctatacttcacactttacataccgtatgtgttagccaaacgaaatgaggaatccatgtctctacccgtcaaactgtctgt gtgtttgtcctcaagtatatcatttggtttcggttgtcactatattgcactgtttgaggagcaggcgctgggtgtacagt ggactaacttctttgacagtcctataacggatgacaactttagcttgttttactgtgttctgatgatgctggtggactcc gttatctatggaatattgacatggtacatagaggctgtctttccagggcagtatgggattcctcgaccttggtatttccc tgtgcagaggtcctattggtgtggtcaacatgttgccatagaaactgatccacaactattttctgaagattatgacaaag aagggcagtatgggattcctcgaccttggtatttccctgtgcagaggtcctattggtgtggtcaacatgttgccatagaa actgatccacaactattttctgaagattatgacaaagaaggcaaaccaatagaagaggaacctgaaggacgtatattggg agttgccattagacatctaaagaaagtttacagtcagggcaagaaagtggcggtagatggtctcagtttgaacttctatg aggggcagataacctccttcctgggtcacaatggggctggaaaaactactacaatcatgacagtggcagaacacctttgg ttttactctcaacttaagggacagagtagagaggatacgaataaagagataaaggaaatggtaaatgatacgggaatgtc acatagaaaagacgagtttccacacatgctgtcaggaggcatgaagaggaagttatcagtagctatagcctttgtaggga acgtaaaaaccgtcatattggacgaaccaacggcaggagtggatccatattccaggagatccatatgggaactcctactt aaattcaaacaaggtaggaccattattctgtcgactcaccacatggatgaagcagacgttctcggtgatcgtatagccat tatctcccagggcaagttatgctgttgtggatccagcctctttctgaagtcacaatacggcagtggatactatttgactc tcgtacggaatgttgatgaggactctgaggagacgtcaggaccaggtatcacaaacagacctgtactgacagacagaccc accagggttgatagacctacattaccacctcctgccatacctactcaggtctccctgacacccatcagtcctcaacccaa aaaacgcagtcctgtcccagctccacgtagaaatgttaatcagctcctgactaaaggagagaaggttgagattaccagta gaccagacgtgaaagaagagcctaaaggtcactccagagacaactctgtgtccagactttacggtgtagtggacaaaaag aggccacagaaaatgcagttcaagagtgagggagcagctgtttgtgaagcttatgctcagaaacaattgttggcctttgt gagaaagtatgtcaggaaggccaagttgacggaggcatctcagaatctatttatggaactagaggctcgccataaagaac taggaatatcaagctttggaatatcagacactagtttagaagaggtatttctgaaggttgctgatgacacaggtgaccac gcctcagatgaaatgaccaggaggaagttagaggagataactgatggtggccgagtacccagacctgtaaccaagctgag tttccgacataaccgtaaagcttcattcttgagatctatgtcaatggaagaaaggaatgaggaggtcaatctgacagaga ataccggtataaaaccttgttgttacccactcatagcttgcttagaagatttatcaaacgcaactgggactttcagccac agttctaatgagcttgtgaaaggtggaatgttgaaacttaaacagttctgtgcactgttcattaagagatttcatcactt cagacgaagcaaaaaaggattcctttgtgaggtacagatctattttgtcccttgtagttgtgatgccagtgctgttcatc ttgatctctatggtgtttgccaagtaatgatgcaggagaccctatcagtgattccctggttaacatccttaaatcagacc aaggagtgggaaatagatgtatggaccctaacattgggcactggttgcaattcagtagatactgtcccataccagtatca gcttgacatggacatggtcaatctaacagcagactgctcttgttctactggggtccagatctgtcccaaaggagcagagg gtccagagcctcccttacagcttctagcctcctctgattacctttatgacctcacagaaaggaatgtctctgattggctg aagaagactaccaaacaatttatgaagaaaagatatggtggtttttcatttggagagaagactaacttggcgaagttaaa caatgacaacatacgagagctgttacataaattatcatcagtagaggcaatagaggaaagcttcaagataaaaaacaaag ctatatggtcaagtatggagtatctactagacagagtggcagctagtgatatatcaaaggtatggtttaacaacaaaggt tacatagctgtagtggcatacataaatgtgatgaacaatataatactgcgaagcaaactgtcaaggggtaaaaatcactc acagtatggtattactacggtcaaccatcccatgcagttgtcacggcaacagtctgagcaagagtcaaaatttaacagta aggctgacgtgattgtggctacctgtgttatctttgccatgtcgtttatccccgctagttttgtgatgacgttaatagag gaacgtatatccagttctaagcacctacattatgccacaattcctatgatgtacccattttcccggttatttgacgtgcc cagtactgccatggttacgttaaaatcaatcaacattttcctggggaccacttcaacattgtctaccttcattctggaat tcttggcagaggaggatgagggtctgaagtacataaaccagataataaaggatatattactgatcttaccacagtactgt ctggggctaggtctgctggaaatgtcacgtaatcagctctataatgatgcattcaaaaaatttgacatagcagggagtac cagtccattacagtggagtatgattggcaagaacctttttgccctggccctacaaggcactttcttcttcaccctcaatc tactcatagagtacaacttcttctgtaaaccaagagaaataaccccaccagacaaccctatagaaaatgaggatgcagat gtttccaaggagaggaggaggcttttaacaggaggagccaaggaggacatcctcaaagtatacaaaatgaacaatgcaaa aggcctgtacacggctgtggaccgattgtgtgtgggtgtaccagccggtcagtgcttcggtctgcttggtgttaatggtg ccggtaaaactaccacattcaaaatgctgacaggaaatataccagtatcaagtggaaatgccttccttgatgataaaagt atagtagatgagatagaccagatccgccatctgattggttactgcccacagtttgatgcctatgacttcctgctgacagc gaaggaagtacttgtattctatgcacgaatcagaggtataccagaaaaagatgtgtgcagtgtagctgattgggcaatta ccagactgggactaatacagtatgctgacaaactatcggggagctactctgggggaaacaaacgcaaactttctacggca atagctctgatcggaaatcccagaattatcttcctggatgagcccactacaggaatggatcctaaagctcgcagatttct gtggaactgtatcaataacattgttaaagatggacgctcggtggtgctaacctctcacaggagtaaatcaatttcaaaat gttcatgtagtctanaacatctcaaaaatagatttggtgatggctacaccatacttctgagactggcaggagaaaatcca agtcttactcccttggagcattttattcgtttaacgttccctggggcgaagcttaaggagaaacatcataacatgctaca gtatcagttaggggccagctttaaattatcatacatctttggtcagatagagtctgtcagggcagagttcaatatagagg actattctgtgctacaaacaactctggatcaagtatttataaactttgccaaactgcagacagatcaacaaacagaggag acacaaactgaggaagacgtacaaatctctgatgctgaaacgtcagatacctacgccaccataggagatactggtatgta cgagtcaccaatttcagtgagaagtttccgagatcaaacccggatcagtcagaccagcagtactatagaacttattgagg aaatcggtacaggggaggcaatctacgtcaaccaggcatatataacagaaacggaggaaatgaccctgtga |
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Protein
| Protein ID | pfu_aug2.0_4.1_13334.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13334.t1 MLKSLFSRHLWITNTVASGSLLGLGDLITQNIEIRYARSKESDKPQKRHIDWKRAGRMLTVGITLGPVGHLWYSHLVDKL VKGAGVKATLKKILADQTFAGPFFCSFFFLGMNLLEGKGLNAGVEEVKEKFLTVYLMDWIIWPPAQFINFQYLPVKYRMV YVSFLTLCWNTILSYIKHKESFKGVTLEKIKEKFVLFFPAEIKGFIMGFGNQLRILLWKNYTLRKRQKYRLLAEILTPLV LFLVLVIVRTRPDIITYHSECHFDGKALPSAGLIPFLQSFFCTFNNTCHETVTPDEMQGNFGNYKQSVITQILEDIEAVL NDNIDRKLIMDLLSDWDILTMLAKKINQGSTKGGVRVGTVLGNPQNVSNEVKAKKINFSIKSLIQLMNATMDFNQLNKPA LSKLLQDFDLCPHSEEVSTGVSLEIWDIVCTSGSVLHALQFHPPEAKDTVKKELCSLSTTELQHLYKAIKNQYSIKRFFM QANRTFSDLARIVKLANDWDGYSDFIRDHFANSPTYDLLRTFSGSCLCDYVEEFTRKSMGKRNSHSICHFLNTLLNGKPE FGEMNWMEVLSFTKSAARIVADYGKCFTFDKFVGFPDEESLLRESAKMIENNTLWGALVFDVDPEKHYSELPTHVKYKIR MDSDRVEPTDRVRASSWRPGPRRAPGKETKFLSYGFAYLQDMVDHAIIKIQTGADTDIGVVVQQFPYPCYIQDTFQYAID RVLPLFLVLAWVFSVAMIXSDEDYGIGEWSTLGSVVYQCFLCYDDYHQYTDCCTQATIMQCFLFSVFFSHANLAACCAGF LYFTLYIPYVLAKRNEESMSLPVKLSVCLSSSISFGFGCHYIALFEEQALGVQWTNFFDSPITDDNFSLFYCVLMMLVDS VIYGILTWYIEAVFPGQYGIPRPWYFPVQRSYWCGQHVAIETDPQLFSEDYDKEGQYGIPRPWYFPVQRSYWCGQHVAIE TDPQLFSEDYDKEGKPIEEEPEGRILGVAIRHLKKVYSQGKKVAVDGLSLNFYEGQITSFLGHNGAGKTTTIMTVAEHLW FYSQLKGQSREDTNKEIKEMVNDTGMSHRKDEFPHMLSGGMKRKLSVAIAFVGNVKTVILDEPTAGVDPYSRRSIWELLL KFKQGRTIILSTHHMDEADVLGDRIAIISQGKLCCCGSSLFLKSQYGSGYYLTLVRNVDEDSEETSGPGITNRPVLTDRP TRVDRPTLPPPAIPTQVSLTPISPQPKKRSPVPAPRRNVNQLLTKGEKVEITSRPDVKEEPKGHSRDNSVSRLYGVVDKK RPQKMQFKSEGAAVCEAYAQKQLLAFVRKYVRKAKLTEASQNLFMELEARHKELGISSFGISDTSLEEVFLKVADDTGDH ASDEMTRRKLEEITDGGRVPRPVTKLSFRHNRKASFLRSMSMEERNEEVNLTENTGIKPCCYPLIACLEDLSNATGTFSH SSNELVKGGMLKLKQFCALFIKRFHHFRRSKKGFLCEVQIYFVPCSCDASAVHLDLYGVCQVMMQETLSVIPWLTSLNQT KEWEIDVWTLTLGTGCNSVDTVPYQYQLDMDMVNLTADCSCSTGVQICPKGAEGPEPPLQLLASSDYLYDLTERNVSDWL KKTTKQFMKKRYGGFSFGEKTNLAKLNNDNIRELLHKLSSVEAIEESFKIKNKAIWSSMEYLLDRVAASDISKVWFNNKG YIAVVAYINVMNNIILRSKLSRGKNHSQYGITTVNHPMQLSRQQSEQESKFNSKADVIVATCVIFAMSFIPASFVMTLIE ERISSSKHLHYATIPMMYPFSRLFDVPSTAMVTLKSINIFLGTTSTLSTFILEFLAEEDEGLKYINQIIKDILLILPQYC LGLGLLEMSRNQLYNDAFKKFDIAGSTSPLQWSMIGKNLFALALQGTFFFTLNLLIEYNFFCKPREITPPDNPIENEDAD VSKERRRLLTGGAKEDILKVYKMNNAKGLYTAVDRLCVGVPAGQCFGLLGVNGAGKTTTFKMLTGNIPVSSGNAFLDDKS IVDEIDQIRHLIGYCPQFDAYDFLLTAKEVLVFYARIRGIPEKDVCSVADWAITRLGLIQYADKLSGSYSGGNKRKLSTA IALIGNPRIIFLDEPTTGMDPKARRFLWNCINNIVKDGRSVVLTSHRSKSISKCSCSLXHLKNRFGDGYTILLRLAGENP SLTPLEHFIRLTFPGAKLKEKHHNMLQYQLGASFKLSYIFGQIESVRAEFNIEDYSVLQTTLDQVFINFAKLQTDQQTEE TQTEEDVQISDAETSDTYATIGDTGMYESPISVRSFRDQTRISQTSSTIELIEEIGTGEAIYVNQAYITETEEMTL |
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