Gene
| Gene Model ID | pfu_aug2.0_4.1_13335 |
|---|---|
| Locus | scaffold4.1 : 489711 ... 526918 : + |
| To GenomeBrowser | scaffold4.1:489711..526918 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_2963.1_59077 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-binding cassette sub-family a member 1 | GO:0005515 GO:0006869 GO:0016020 GO:0016043 GO:0044238 GO:0044424 GO:0044763 GO:0050789 GO:0051716 GO:0071704 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13335.t1 | 5 | 1 | ABC2_membrane_3 | 99 | 219 | 2.29953e-42 | 145.2 | 0.93 | 2000.0 | -2.5 |
| pfu_aug2.0_4.1_13335.t1 | 5 | 2 | ABC2_membrane_3 | 736 | 938 | 2.29953e-42 | 145.2 | 2.1e-22 | 4.5e-19 | 68.6 |
| pfu_aug2.0_4.1_13335.t1 | 2 | 1 | ABC_tran | 1015 | 1097 | 1.8e-33 | 115.7 | 2.9e-16 | 6.2e-13 | 49.2 |
| pfu_aug2.0_4.1_13335.t1 | 5 | 3 | ABC2_membrane_3 | 1391 | 1416 | 2.29953e-42 | 145.2 | 0.017 | 35.0 | 3.2 |
| pfu_aug2.0_4.1_13335.t1 | 5 | 4 | ABC2_membrane_3 | 1614 | 1735 | 2.29953e-42 | 145.2 | 6.3e-19 | 1.3e-15 | 57.2 |
| pfu_aug2.0_4.1_13335.t1 | 5 | 5 | ABC2_membrane_3 | 1787 | 1912 | 2.29953e-42 | 145.2 | 4.7e-12 | 1.0e-08 | 34.6 |
| pfu_aug2.0_4.1_13335.t1 | 2 | 2 | ABC_tran | 1983 | 2120 | 1.8e-33 | 115.7 | 9.5e-21 | 2.0e-17 | 63.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13335.t1 | gi|524888083|ref|XP_005100618.1| | PREDICTED: ATP-binding cassette sub-family A member 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_4.1_13335.t1 | gi|741936833|ref|XP_010806526.1| | PREDICTED: ATP-binding cassette sub-family A member 1 isoform X2 [Bos taurus] | 0.0 |
| pfu_aug2.0_4.1_13335.t1 | gi|573883277|ref|XP_006629803.1| | PREDICTED: ATP-binding cassette sub-family A member 1-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_4.1_13335.t1 | gi|632978998|ref|XP_007906223.1| | PREDICTED: ATP-binding cassette sub-family A member 1-like [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_4.1_13335.t1 | gi|741936829|ref|XP_010806524.1| | PREDICTED: ATP-binding cassette sub-family A member 1 isoform X1 [Bos taurus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13335.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13335.t1 atgggattctggagtcagttattgctgttgtcatggaaaaacttcactctccgcaaaagacaaaagttgcggtttgtggc agagatagttttcccgctaaccttgtttgttatattagtcatggtcaggactcgacccgatctcaaaatcagaaatccaa gatgtcactatgacggtaaagccatgcccagtgcaggcttgataccgttcttacagtcgtttgtgtgtacgtatagtaat acatgttaccagacagtcagagaagacgaacaaccagggacggtaacaacattcaacagctctgcgctgacaaggatagt tgaggatctagagaggatactatccagtaatggtatctcagagatagagacattggtaactgacgctgctgtactacagc aaatgtaccaggtcataaccagcggtaattctcagggaggggtaaatatcggcagtttgatcgtaagtcctagcgctgta acaagcgctgtacaggataatactgtatcacaagccatactggatttaatggacgctcaaattaatctgggaagtttaaa ccttgggttggtgaatgagttactggaggacacaggagtgtgtacagtggatgctgctgcccagcgtctgaacatatctg tagaacaagttcagtttcagaacctcctctgtgagaacgataccatcgcatccttcgttaatttctccagcagtgctgcc agtgctgaagcctcctcgacgttctgtaaccgctctaatccggtgtccctggagaacgcaggtcttcttctaggaatact acaaaggaactttagcgtaaataacctgctatctgaccttgcagggtttttcttggcaaatacagggagttcactcggta tccttgacttcagtactcgcaatgaatttgtgaaggtcatcacagacatctttaatttaccaagcaccaggtttacatca ttacaagcagacttgaatgcgttgaccagtgacttccagaatttacagggtatggacctaggacaggccgtctgcggagg ctcgtctttgttcggtctatctacgggaggcggcattgccgctggtctcgctggatttactagtttgttggatgaagatg tggacaacaatggttcgggtaacatgacgaccacacctacatcgggaggatcggcaactggcacgcctacgcagaaaact acacagaaaactacacagaagactacacagagaactacgcctagctttggacctgaggcacctcgatgtaagaatcttaa cagtgcgttgaagaatgcagaaggtattaggattgtatggagacagatcagccctatgctaaacggaaaaatcctttatt atcccgatacgccagctgtcaggaaaattatacaagaggcaaacagaacattcgacagtgcattccagttcgtacagcta gcagctaatttcagttccgattcgtactaccagctctacgattatctgaacaacagtgcaaacattgagttcctcaggac gttgacaggatcttgtctatgtgaccagtatctgtcacaagctcagggtacctctcaaaatgccagtatctgtaaattcc tgtcgggattcctcaataacggaaagcctgatggatatgattggagaaatgctataaataacacaaaactcctcgcaaac caaatatacaacatatttgggtgttttgaattcaacaagtttgtgggttataatgacagtgacaagatgatgaatgacgg aatagagatgataggggaatatacgttttgggcagctcttgagtttgatgtatctaccgaccccaatgctcccatgccca ctcacatccagtacagaatacgtatggatacagataaagtggacaatacaagacctcttgagtttgatgtatctaccgac cccaatgctcccatgcccactcacatccagtacagaatacgtatggatacagataaagtggacaatacaagacgtataca ggataagtattggagaccaaggccacgtggaagtgtaccaaccgacactaagtatttctcatatggatttatctacatac aggacatgatagaccatgccataatagacttacagaccaagaaagacgtgtctgtaggggtgtttatgcagcagatgccc tatccctgccatgtaaatgacaggtttatttttgcgatatctcgctcgttgcccctgtttctgaccctggcctgggtgtt gacagttgctatggtatgtaaaagtatcgtttatgagaaggaacgccgtctgaaggaagtgatgaagatgatgggcctta ataacggtgtgcactgggtggcatggtttatcaacgccttcattatgatgttcctaacctgtgttgtactggtatttata cttaagtttggaaaagtcctggagtattcagaccctagtgccgtgttggtattcctgacggcattcgccattgctaccat cgcgcagtgcttcctgttcagcgtgtttttctcccatgctaacattgcagcatgtgtggctggtttcctctacttcatgc tgtatctaccatacaacctggcagcccaatgggaggacagcatcacacctggatataaattcatctcttgcttgtcatca agtatatcgtttggttggggctgtagttatttagccagatttgaggaacagtctataggattacagtggagtaactttaa tgaatcacctctagtggatgacactttcagcatgtttaagtgtatcttaatgatgctgtttgatgccttgatttatggtc tggccacctggtatatagaggctgtttttcctggccagtacggagttgctcgcaagttctactttccattccaaaagtca tactggtgtggcacaaaccatagtgattatatgccagaaacagaactggatactagagctgataaaaatttagtcctgga ggcagagccaaaggataggaaacttggtgtgtccgtccgtaacttgaaaaaagtgtataaaacaggcaacaaaacagcag tggatggactgtcaatcaatttctatgaaggtcagatcacatccttccttgggcataatggagcaggaaagactacaaca atgtcgatcctgacagggttatttccccctactagcggcactgcctatgtacatggctatagcattctatcagagatgga catggtcaggaagagtttaggaatgtgtccacagcataacgtcctctttgacaagaccattattctgtcaacccaccaca tggatgaagcagacgttctcggagatcgtatagccattatctcccagggcaagttgtgctgttgtggatccagcctcttt ctgaagtctaagtacagtagcggatactacctgaccatggtgaggaagaaggagggtgatccagatacgtacgacagcga tgatgatgatgatgatttagacgatgcggaagcattcggcagtaggatcacgcctacttgtgtagagaatgaggatgagg ggtacgctgatagtaagagtgacagtgacccacccaccccacctcctgaagatgccactatgataccaggattttctatc agtcgtgtagaggcgtttatcaagaagtacgtacctggggcacacctggctgaggacaacacaactgaagtcacattcca gctccctgacagtgccaatcaaacagccatgtttgagaggctgntatgttttacaatgtcaaagtgggtgaaaagatatt taagttacaatcaattcttttatattacgctttccatctttaaattacacttccttgagcaaatattacaatttaagcaa gaaacagctaggcaggtctgaggtagatttgctagacctgtcacaagactgagcttcagaaggaagaagaagaagtcctt ccttaaatatctggctgaacgatcaaaatatggaaaaccaaagattgactccgaagaactggtaactgatacagaatcaa ttgcctctgagcccactggatctgagatgggaagtgtcaccaaccttgatgtccctaaccttgatggatttaaccacaag tctattactcgtaccaaaggcaaagtcctactcataaaacagtttgccgccatgtttatcaaacgtttccaccgtctcag acggagcaagaaaggcttcttctttgagataatcctgccggctttatttgtactccttgctatggtttttgctgagatca gaccccctatatatgaggaaccccctctagaacttcacccctggcaatatgtatccaagataggagacccacatctcttt gttttctacagtaacgatgcccctggaaagaagtcagctgatgacctagttagtacattactaagtagtcctggtatggg aactcgctgtatggacccaagtgtaaacactatagaagactacccgtgtcctggcagtacaggagggtggaacaataact accgcatacagcccaatactacagtctactcaccggaatgctcatgcgagaaaacgggattccccatatgtcctgcaggt gcaggaggtcctgaccccccaagtagacttttggtgacatcagactacctgtataacatgaccggcagaaacatcagtga ctgggccattaaaaccacaaaaagatacagaaaacgaaggtatggcggtttctcatttggtgacaccaatgccttggctg ggctgaatgctacacagctacggggcttccttgacattctgaccagagcggcaaataatggcacagctatattacaaggc aatgagactgagtggttagcggcttttgaagcattagctgtctcagacagtgccaaggtatggtttaacaacaaaggctg gatgtcaagtgttgcatacatgaactctcttaacaacatgatcctacgtactaaccttgacccggcagtaagggctaagt acggtattaccaccatcaaccatcccatgaaactgaccaaaaaacaactgaatcaagaattactttactccagtgccatt gaccttgtgatagctatctgtgtaatcttcgccatgtcttttgtgccggccagttttaccatggttctcatagaggagag agcctccaactctaaacatctacagtttgttagtggagttaacccggctatgtactggtttgggaacactgcatgggata tggtaagcagtcatgcaatacgaaagatagcaaatgcatgtacttctaaccaagaatatatgaatgttctcgcacactct tcgattgttctcaattgttatgacgtcatcaatttacttgggcagaaaaggtgcccaagttttgaacaatggtttagatg ggccatgataccgttaatgtacccgttctcacggttatttaatgtacctagtacagccatggtggtattaacgtcattta acatattcctgggcacgacagccacactagccgtgtttattgtgggaattctcggcaggacggatgaggagctagaagcc atcaatctgattctacagaaagtattccttgtattaccacagtattgtctgggcaaaggtctgattgatatgtctactaa ccagctagaagctgaggtcatggaactactaggtgaaagcaagaatttgaagagtcccttccagtttgacattgtgggac gtaatcttctcgccatgttttgtatgggaatcttcttcttcattctgaatttgctcattgagtacaacttctttataaag agaagcatgcagtgcttttggagtcctaggccaaaccatcgttctctggatgaagatgacgttgatgtagcagcagagag gaaaagaatatcatcaggagaagctaaagatgatgtactgagactagaaaatctaaccaaggtgtatcgtctgtttggaa agaaggggaggaacacagctgtggacagattgtgtgtgggtgtaccagctggtcagtgctttggtctgctcggtgttaac ggtgccggtaaaactaccacattcaaaatgctgacaggggatgtgggtgttactaggggaaacgcattcctgaacaataa aagtatacttactgacctagtacaggtacgtagggagcttggctactgtccacagtttgacgcctttgacaacatgatga caggacgagagatactatgcttctatgccagactgagaggagttccagaaaaagacgtcaaaacagtatcagaatgggcc ataaggaagctgggattgctaccctatgctgacaaactatcaggaagttactctggaggaaacaagagaaaactctccac cgccatatccctcataggaaatccgcaaattatattcctggtaaattttactcaacattcacacattgaaataccgtata tcggtctcaaagtcgagaaggcaaggcaaaatcttgagaattcccatcgaaacggttgcgaaccccggaatgaacaacat gctgaagtgagaccaggtgcccggggagagtcggcgtctcctgattgcatgcaacacctgtcgcaacagttcaatggaaa cctgtcaaatttggttattgtcttgatgtacattttgatgtacagatcagacaagacccgatccctaactttgccagtag atgatcctacaccatctataaatgattgtgacagtctagccggatcaacgatagaactgatgaagagaaatgacagtaca gcatcaggatttgacagtgaatcgttgaattacccagactacacagatgaggagagtctagccgggagtcaggtggatct gatccgccccagtaaaccaaagcataactccggagactttccgagtgtccagatattctga |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13335.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13335.t1 MGFWSQLLLLSWKNFTLRKRQKLRFVAEIVFPLTLFVILVMVRTRPDLKIRNPRCHYDGKAMPSAGLIPFLQSFVCTYSN TCYQTVREDEQPGTVTTFNSSALTRIVEDLERILSSNGISEIETLVTDAAVLQQMYQVITSGNSQGGVNIGSLIVSPSAV TSAVQDNTVSQAILDLMDAQINLGSLNLGLVNELLEDTGVCTVDAAAQRLNISVEQVQFQNLLCENDTIASFVNFSSSAA SAEASSTFCNRSNPVSLENAGLLLGILQRNFSVNNLLSDLAGFFLANTGSSLGILDFSTRNEFVKVITDIFNLPSTRFTS LQADLNALTSDFQNLQGMDLGQAVCGGSSLFGLSTGGGIAAGLAGFTSLLDEDVDNNGSGNMTTTPTSGGSATGTPTQKT TQKTTQKTTQRTTPSFGPEAPRCKNLNSALKNAEGIRIVWRQISPMLNGKILYYPDTPAVRKIIQEANRTFDSAFQFVQL AANFSSDSYYQLYDYLNNSANIEFLRTLTGSCLCDQYLSQAQGTSQNASICKFLSGFLNNGKPDGYDWRNAINNTKLLAN QIYNIFGCFEFNKFVGYNDSDKMMNDGIEMIGEYTFWAALEFDVSTDPNAPMPTHIQYRIRMDTDKVDNTRPLEFDVSTD PNAPMPTHIQYRIRMDTDKVDNTRRIQDKYWRPRPRGSVPTDTKYFSYGFIYIQDMIDHAIIDLQTKKDVSVGVFMQQMP YPCHVNDRFIFAISRSLPLFLTLAWVLTVAMVCKSIVYEKERRLKEVMKMMGLNNGVHWVAWFINAFIMMFLTCVVLVFI LKFGKVLEYSDPSAVLVFLTAFAIATIAQCFLFSVFFSHANIAACVAGFLYFMLYLPYNLAAQWEDSITPGYKFISCLSS SISFGWGCSYLARFEEQSIGLQWSNFNESPLVDDTFSMFKCILMMLFDALIYGLATWYIEAVFPGQYGVARKFYFPFQKS YWCGTNHSDYMPETELDTRADKNLVLEAEPKDRKLGVSVRNLKKVYKTGNKTAVDGLSINFYEGQITSFLGHNGAGKTTT MSILTGLFPPTSGTAYVHGYSILSEMDMVRKSLGMCPQHNVLFDKTIILSTHHMDEADVLGDRIAIISQGKLCCCGSSLF LKSKYSSGYYLTMVRKKEGDPDTYDSDDDDDDLDDAEAFGSRITPTCVENEDEGYADSKSDSDPPTPPPEDATMIPGFSI SRVEAFIKKYVPGAHLAEDNTTEVTFQLPDSANQTAMFERLXCFTMSKWVKRYLSYNQFFYITLSIFKLHFLEQILQFKQ ETARQVXGRFARPVTRLSFRRKKKKSFLKYLAERSKYGKPKIDSEELVTDTESIASEPTGSEMGSVTNLDVPNLDGFNHK SITRTKGKVLLIKQFAAMFIKRFHRLRRSKKGFFFEIILPALFVLLAMVFAEIRPPIYEEPPLELHPWQYVSKIGDPHLF VFYSNDAPGKKSADDLVSTLLSSPGMGTRCMDPSVNTIEDYPCPGSTGGWNNNYRIQPNTTVYSPECSCEKTGFPICPAG AGGPDPPSRLLVTSDYLYNMTGRNISDWAIKTTKRYRKRRYGGFSFGDTNALAGLNATQLRGFLDILTRAANNGTAILQG NETEWLAAFEALAVSDSAKVWFNNKGWMSSVAYMNSLNNMILRTNLDPAVRAKYGITTINHPMKLTKKQLNQELLYSSAI DLVIAICVIFAMSFVPASFTMVLIEERASNSKHLQFVSGVNPAMYWFGNTAWDMVSSHAIRKIANACTSNQEYMNVLAHS SIVLNCYDVINLLGQKRCPSFEQWFRWAMIPLMYPFSRLFNVPSTAMVVLTSFNIFLGTTATLAVFIVGILGRTDEELEA INLILQKVFLVLPQYCLGKGLIDMSTNQLEAEVMELLGESKNLKSPFQFDIVGRNLLAMFCMGIFFFILNLLIEYNFFIK RSMQCFWSPRPNHRSLDEDDVDVAAERKRISSGEAKDDVLRLENLTKVYRLFGKKGRNTAVDRLCVGVPAGQCFGLLGVN GAGKTTTFKMLTGDVGVTRGNAFLNNKSILTDLVQVRRELGYCPQFDAFDNMMTGREILCFYARLRGVPEKDVKTVSEWA IRKLGLLPYADKLSGSYSGGNKRKLSTAISLIGNPQIIFLVNFTQHSHIEIPYIGLKVEKARQNLENSHRNGCEPRNEQH AEVRPGARGESASPDCMQHLSQQFNGNLSNLVIVLMYILMYRSDKTRSLTLPVDDPTPSINDCDSLAGSTIELMKRNDST ASGFDSESLNYPDYTDEESLAGSQVDLIRPSKPKHNSGDFPSVQIF |
|