Gene
| Gene Model ID | pfu_aug2.0_4.1_13340 |
|---|---|
| Locus | scaffold4.1 : 563778 ... 567960 : - |
| To GenomeBrowser | scaffold4.1:563778..567960 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_39304.1_19717 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna primase large subunit-like | GO:0003896 GO:0006269 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13340.t1 | 2 | 1 | DNA_primase_lrg | 15 | 167 | 0.0 | 180.5 | 0.0 | 1.19951e-42 | 146.0 |
| pfu_aug2.0_4.1_13340.t1 | 2 | 2 | DNA_primase_lrg | 179 | 213 | 0.0 | 180.5 | 2.1e-12 | 3.2e-08 | 33.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13340.t1 | gi|641797438|ref|XP_008161992.1| | PREDICTED: DNA primase large subunit isoform X2 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_4.1_13340.t1 | gi|676482167|ref|XP_009062610.1| | hypothetical protein LOTGIDRAFT_128625 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13340.t1 | gi|742177820|ref|XP_010887300.1| | PREDICTED: DNA primase large subunit isoform X2 [Esox lucius] | 0.0 |
| pfu_aug2.0_4.1_13340.t1 | gi|524886893|ref|XP_005100037.1| | PREDICTED: DNA primase large subunit-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_4.1_13340.t1 | gi|291240166|ref|XP_002739991.1| | PREDICTED: DNA primase large subunit-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13340.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13340.t1 atggcagccggaggtaggaatgccgcaaccatggacacacaggaattcttcaaggtgcccttcacggaagtatttgactt gattcagcgtcggagggtgttcctgagtagaggatatgcttttgtacccagagatgatcttgtatctatagtcatcactc actacagaactcaactctcacatgctttagctatgacttcacgagcgttacctcatcttgaagaagacaacagactgctg ccgatgttatctggtctcagtaagcggtacttaggagaggattatgggacaaagaagaataatgccggtcaagtgacggc cgatatgattgatatgctttcccggcagtcttttcctctatgcatgcagcagctacatcaagcatgtcgtcgtgaccatc acttacggcacgggggtcgacagcagtatggactcttccttaaaggtataggactgtcactggaggaagccatgaagttc tggaaaactgaattcatgaaaatgatggatggggataaggcaatatcctttgtgaaaggaggtcactaccagcttgcctg taaaagttattttgaagccacccacccacccctacctgatggagaggacattagtataaaccatcctaatcaatactttg atgaaagtcgaagggtcctcagtggagagaaaaaggaaggatccagactgtcccagccccctagaactcctgcctctaag tctacccagccatcacagaacactccccagtcacagtccagtaaccctacccagactcaaggtgcaccatcgtcacagat cagcgaactcggggaaatggaagacgatgatgacctactggcaagcatggaaacttag |
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Protein
| Protein ID | pfu_aug2.0_4.1_13340.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13340.t1 MAAGGRNAATMDTQEFFKVPFTEVFDLIQRRRVFLSRGYAFVPRDDLVSIVITHYRTQLSHALAMTSRALPHLEEDNRLL PMLSGLSKRYLGEDYGTKKNNAGQVTADMIDMLSRQSFPLCMQQLHQACRRDHHLRHGGRQQYGLFLKGIGLSLEEAMKF WKTEFMKMMDGDKAISFVKGGHYQLACKSYFEATHPPLPDGEDISINHPNQYFDESRRVLSGEKKEGSRLSQPPRTPASK STQPSQNTPQSQSSNPTQTQGAPSSQISELGEMEDDDDLLASMET |
|