Gene
| Gene Model ID | pfu_aug2.0_4.1_13341 |
|---|---|
| Locus | scaffold4.1 : 568361 ... 591511 : + |
| To GenomeBrowser | scaffold4.1:568361..591511 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_16647.1_03738 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable lysosomal cobalamin transporter-like | GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13341.t1 | 2 | 1 | LMBR1 | 5 | 259 | 2.7e-18 | 65.8 | 1.3e-19 | 4.7e-16 | 58.4 |
| pfu_aug2.0_4.1_13341.t1 | 2 | 2 | LMBR1 | 289 | 412 | 2.7e-18 | 65.8 | 7.3e-06 | 0.027 | 13.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13341.t1 | gi|524910891|ref|XP_005110319.1| | PREDICTED: probable lysosomal cobalamin transporter-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_4.1_13341.t1 | gi|676482164|ref|XP_009062609.1| | hypothetical protein LOTGIDRAFT_235253 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13341.t1 | gi|156402245|ref|XP_001639501.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_4.1_13341.t1 | gi|260797140|ref|XP_002593562.1| | hypothetical protein BRAFLDRAFT_88503 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_4.1_13341.t1 | gi|449687794|ref|XP_002156382.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13341.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13341.t1 atggaccagacatgcacatttcagctgatattgttgtttgccacggcctatgtgaagtacttcatcagtaaatatgatgg tacaatatcagttaccatagcagccattgtggctatcagcgttacactcctcaccactgcactcatacccgtcgacatct tcctggtatcatatatgaaaacatcaaatggaacgtttcagccatgggcgcaggatacatccacacgtcagtcattggag aaatctgtggaatatgcttattactcactgtatggattgatcatattctgccagtttttgctgttgccattcatgtactt cttcttcgaggagaaagacgaagaaacttccaataaatcgagatgttgctcagccctaaagttcaccgttgtttttcttt tgatagttacagttctgttgttgattggagcgtttgtaggaagaaaggacatatcaagtgtgatgggcaacaacagtaca tcagaatggaacaaagtacaagcttcatttgtggacttcgctaacagcacaaggtttgaagatgcattgtcgtttgtgat gagtgtactaagtttacttggaatgatggccctcgtcacttatacggcctatggaatgtcggccatgcctatggatttta tcaaaggtcgacgaagtgtgaagtctgaaaggttagctgtacaaaaagacaggtcaagtatccgtgaccggctgaaagct atgagagaaaagtattcatcaagagggagaaatccgggcaggatctctgacctcgaggaatccgagcatctcatggctcg gcaggaaaaacatctcgctgacaaggaatcgagctgtctgagaaaatgtctgacaatcctgaggccgtttgaagtcatct ttggtgttatctttattctggtcaccctgctgatatttatatctctacttctcacaaacattgacaaggctatacacagt ctgggtcccaagcttggttatgccctccccaagcggtatctccctaatccagtggatattgtactagtcttttgtcaaca agtattcccacttgactacatcatgtttgctggtatcgttctgtacctggttgtctgttccatgtcagggatcagaaaca ttggaatctggttcttctggctcaggatgtacaagatccgtccccgtcgtacacgtccccagggaatcctgatgctgtgt atgattctaatgtttatgatgctggccattaacgttatagtgtatgagctgaccccacagtattcatcatacggcagtca gagatatatggaatacagaaacagtacaactggtaatcataccactgtgacacactctctaaaaccatgtacaacagaag tctcatcagataattgtgtgttgagcaggatgtcattgctgttgacaaggttcttctatcaaatgtggttctttggagca gcttattactggggaacttggctcttcctaggggtaagtaaattatggttctttggagcggcttattactggggcatttt gagcttccatggggtaagtaaatgtatggttctttggagcggcttagtactggggctcctggctcttcctagtgatgggg atgtagcccctggggtacggatttttaaaattatttcaaatgtagtcaaatgtagagatgataaggtaaatattaagata gcaatattttgcctttaa |
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Protein
| Protein ID | pfu_aug2.0_4.1_13341.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13341.t1 MDQTCTFQLILLFATAYVKYFISKYDGTISVTIAAIVAISVTLLTTALIPVDIFLVSYMKTSNGTFQPWAQDTSTRQSLE KSVEYAYYSLYGLIIFCQFLLLPFMYFFFEEKDEETSNKSRCCSALKFTVVFLLIVTVLLLIGAFVGRKDISSVMGNNST SEWNKVQASFVDFANSTRFEDALSFVMSVLSLLGMMALVTYTAYGMSAMPMDFIKGRRSVKSERLAVQKDRSSIRDRLKA MREKYSSRGRNPGRISDLEESEHLMARQEKHLADKESSCLRKCLTILRPFEVIFGVIFILVTLLIFISLLLTNIDKAIHS LGPKLGYALPKRYLPNPVDIVLVFCQQVFPLDYIMFAGIVLYLVVCSMSGIRNIGIWFFWLRMYKIRPRRTRPQGILMLC MILMFMMLAINVIVYELTPQYSSYGSQRYMEYRNSTTGNHTTVTHSLKPCTTEVSSDNCVLSRMSLLLTRFFYQMWFFGA AYYWGTWLFLGVSKLWFFGAAYYWGILSFHGVSKCMVLWSGLVLGLLALPSDGDVAPGVRIFKIISNVVKCRDDKVNIKI AIFCL |
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