Gene
| Gene Model ID | pfu_aug2.0_4.1_13343 |
|---|---|
| Locus | scaffold4.1 : 626191 ... 656403 : + |
| To GenomeBrowser | scaffold4.1:626191..656403 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_14001.1_46699 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription factor ap-2 beta | GO:0003700 GO:0005634 GO:0006355 GO:0007422 GO:0014032 GO:0014036 GO:0030182 GO:0030318 GO:0030902 GO:0043049 GO:0048701 GO:0050935 GO:0051216 GO:0060041 GO:0071698 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13343.t1 | 1 | 1 | TF_AP-2 | 208 | 414 | 0.0 | 306.4 | 0.0 | 0.0 | 306.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13343.t1 | gi|390339129|ref|XP_003724936.1| | PREDICTED: transcription factor AP-2-alpha isoform X2 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_4.1_13343.t1 | gi|390339131|ref|XP_003724937.1| | PREDICTED: transcription factor AP-2-alpha isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13343.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13343.t1 atgtccttcctggccatagagcctaacacaccctggcaggacaggagagatttgggtagtcatggaggcctgggtcagct ggtcagttccgtgtccacagcagggtcatttccccctgcccccaggctgtcacacacgcccacctcagatttccagccac cctactttcctccgccatataatttaccatcacaacaaaccatggactttcacccacattttaatgcggattcgtactca catctcagcaatttccatcaacaaactcagcagcattatcaccagctccacacccctgacaggaatgtgttacggtataa ggaggaaccgctccataatgtacaccctggacttacccctccccactcagactacggcggtatccgccggcctgacatac tcatgtccgggggtcatcctctaggatttggtgaacagaaccccaatattctgaacatccacccctccgctggactcccg ggaatggaagatcatagccagggagtcattgatgaagcagggaattatatctcagcagaccataacggggtcatcagaaa gggtatccgacccaagaacgacaacaataaagatttagtagtgtcaggagtcacctcccctgctgacgtgttctgttctg tacccggccgtctgtcgttacttagcagcacgtccaagtacaaagtcacggtagctgaggtacagagacgcttatcgccg ccagaatgcctcaatgcgtcacttcttggaggtgtactacgcagagcaaaatcgaagaatggaggacgttcattgagaga caaacttgacaaaataggtttaagcttgcctgctggtagacggaaggccgccaacgtaacgctgcttacgtcacttgtag aaggggaagcggtccgactggctagagactatggttacctgtgtgagactgagtttcccgccagacagtgtgccgagtat aacagccgacaatactgtgctgaccccacagaccaaatggccaggaaaaacatggtactggctacaaaacaaattcttaa ggaatttatggatttattaaaccaggacagatctcctctgggaaatacccgacctcagccgatcctggagccgggaattc agcgccacctgacgcattttagtctaattacacatgggttcggttccccggccgtcgtggcctccctcacggccgtacag tcttaccttaatgaacttcttaaaattttggacaaaagttattctacaggacaaaactcgcaggttcccggaagtcagat agaaaataatgtcaagccaaaaataacagaaaaagatgaaaacaggagagactaa |
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Protein
| Protein ID | pfu_aug2.0_4.1_13343.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13343.t1 MSFLAIEPNTPWQDRRDLGSHGGLGQLVSSVSTAGSFPPAPRLSHTPTSDFQPPYFPPPYNLPSQQTMDFHPHFNADSYS HLSNFHQQTQQHYHQLHTPDRNVLRYKEEPLHNVHPGLTPPHSDYGGIRRPDILMSGGHPLGFGEQNPNILNIHPSAGLP GMEDHSQGVIDEAGNYISADHNGVIRKGIRPKNDNNKDLVVSGVTSPADVFCSVPGRLSLLSSTSKYKVTVAEVQRRLSP PECLNASLLGGVLRRAKSKNGGRSLRDKLDKIGLSLPAGRRKAANVTLLTSLVEGEAVRLARDYGYLCETEFPARQCAEY NSRQYCADPTDQMARKNMVLATKQILKEFMDLLNQDRSPLGNTRPQPILEPGIQRHLTHFSLITHGFGSPAVVASLTAVQ SYLNELLKILDKSYSTGQNSQVPGSQIENNVKPKITEKDENRRD |
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