Gene
| Gene Model ID | pfu_aug2.0_4.1_13348 |
|---|---|
| Locus | scaffold4.1 : 719733 ... 732478 : + |
| To GenomeBrowser | scaffold4.1:719733..732478 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_28408.1_33671 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| threo-3-hydroxyaspartate ammonia-lyase-like | GO:0004794 GO:0006567 GO:0016597 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13348.t1 | 1 | 1 | PALP | 20 | 274 | 0.0 | 208.7 | 0.0 | 0.0 | 208.3 |
| pfu_aug2.0_4.1_13348.t1 | 1 | 1 | ACT | 299 | 364 | 6.7e-08 | 31.8 | 8.6e-11 | 2.5e-07 | 30.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13348.t1 | gi|676474843|ref|XP_009060275.1| | hypothetical protein LOTGIDRAFT_183268 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13348.t1 | gi|260823748|ref|XP_002606830.1| | hypothetical protein BRAFLDRAFT_286400 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_4.1_13348.t1 | gi|585662930|ref|XP_006816837.1| | PREDICTED: threo-3-hydroxyaspartate ammonia-lyase-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_4.1_13348.t1 | gi|340714157|ref|XP_003395598.1| | PREDICTED: threo-3-hydroxyaspartate ammonia-lyase isoform X2 [Bombus terrestris] | 0.0 |
| pfu_aug2.0_4.1_13348.t1 | gi|340714159|ref|XP_003395599.1| | PREDICTED: threo-3-hydroxyaspartate ammonia-lyase isoform X1 [Bombus terrestris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13348.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13348.t1 atgaagcagcagcaagtacttccagtgcaaaatcaaagcgacattctcctgccaaatttcaaagagagaggcgctaggta tgcattgcaaatgctgtcaaaggagcagaaggagaaaggtgtgatagcggccagtgctggtaaccacgccctagccctgt cgtaccacggacatgatctaggtattaacgtcactgtcatcatgcctatcatagctcctataatgaaagtgtcagcatgt aaaagttacggtgccaacgtcattatccacggagctgatatatcagtgtcaaaagattatgcacagagacttggaaaaga aaagggactaatgtacattaatggttatgaccacccacacattttagcaggacagggaaccatgggattggagattttag agcaggtccctgatcttgatgcttgtatcatacctgtagggggaggagggctgatagctggaacagccttggctattaaa aacttgagacctgatgtcaaaatcattggtgtagaatcagagcaatgccctagttttagtgcagctatagatgcaggtaa acctgttagagctaacacaggatcaaccattgctgatggtcttgccgtaccaactgttggagtgaatgcctttgtcacag ccaagagccttatagataggatgattacagtaaaagaggagtacatagccctggccatactgcgattagtagaattggag aaagccgtggtggaaggagctggtgccacaggcctagcagctataatacaaggattggtacccgaactagaaggcaaaaa agtggtagtagctctctgtggaggtaacatcgacactactgcccttggtagagtcatagagagaggtttagctgcagatc accggctgatacggtttgtggtcactgtcagtgatagaccaggcggtatagcagaactgaccaaagtattatctgatcta ggtgtcagcataaaagacattttccatgagagagcatggctaaaatcaaatatattcaatgttcaggtaaaatgtgtagt agaaacgagagaccatgaacatgctgcagagttagagaacgccctgcgtaaaaagtaccagcaagttatatgggggcctt ggtacttttga |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13348.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13348.t1 MKQQQVLPVQNQSDILLPNFKERGARYALQMLSKEQKEKGVIAASAGNHALALSYHGHDLGINVTVIMPIIAPIMKVSAC KSYGANVIIHGADISVSKDYAQRLGKEKGLMYINGYDHPHILAGQGTMGLEILEQVPDLDACIIPVGGGGLIAGTALAIK NLRPDVKIIGVESEQCPSFSAAIDAGKPVRANTGSTIADGLAVPTVGVNAFVTAKSLIDRMITVKEEYIALAILRLVELE KAVVEGAGATGLAAIIQGLVPELEGKKVVVALCGGNIDTTALGRVIERGLAADHRLIRFVVTVSDRPGGIAELTKVLSDL GVSIKDIFHERAWLKSNIFNVQVKCVVETRDHEHAAELENALRKKYQQVIWGPWYF |
|