Gene
| Gene Model ID | pfu_aug2.0_4.1_13353 |
|---|---|
| Locus | scaffold4.1 : 767478 ... 776982 : - |
| To GenomeBrowser | scaffold4.1:767478..776982 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_108.1_50638 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| l-threonine 3- mitochondrial- partial | GO:0003824 GO:0008152 GO:0050662 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13353.t1 | 1 | 1 | RmlD_sub_bind | 61 | 208 | 3.2e-09 | 36.0 | 1.8e-12 | 3.9e-09 | 35.8 |
| pfu_aug2.0_4.1_13353.t1 | 2 | 1 | Epimerase | 62 | 297 | 1.3e-19 | 70.5 | 6.9e-22 | 1.5e-18 | 67.1 |
| pfu_aug2.0_4.1_13353.t1 | 1 | 1 | 3Beta_HSD | 63 | 182 | 4.5e-08 | 32.1 | 3.8e-11 | 8.1e-08 | 31.3 |
| pfu_aug2.0_4.1_13353.t1 | 1 | 1 | NAD_binding_4 | 123 | 278 | 3.4e-08 | 32.7 | 3.2e-11 | 6.7e-08 | 31.7 |
| pfu_aug2.0_4.1_13353.t1 | 2 | 2 | Epimerase | 327 | 362 | 1.3e-19 | 70.5 | 0.089 | 190.0 | 1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13353.t1 | gi|291231078|ref|XP_002735491.1| | PREDICTED: L-threonine 3-dehydrogenase, mitochondrial-like, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_4.1_13353.t1 | gi|675849214|ref|XP_009010167.1| | hypothetical protein HELRODRAFT_108931 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_4.1_13353.t1 | gi|498947403|ref|XP_004522527.1| | PREDICTED: L-threonine 3-dehydrogenase, mitochondrial [Ceratitis capitata] | 0.0 |
| pfu_aug2.0_4.1_13353.t1 | gi|676421669|ref|XP_009043830.1| | hypothetical protein LOTGIDRAFT_177130 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4.1_13353.t1 | gi|194749719|ref|XP_001957284.1| | GF10346 [Drosophila ananassae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13353.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13353.t1 atgttccgttcccgtgtaatgtccgttcctcttggtttactctgccgatgtaaggcgagggaagttcagcgtgcgtcaaa gatcctacgtcttgtcaccgccagtccagtccaaactgtgcgtcatttcaatggcgtcaacgaaccccatcaacagtatg aagtatcgcatgcacacccaagagtgcttataacaggtagtcttggacagttgggaaccggcctagctaaagtactgaga agtcggtatgggaggaacaatgtcattatgtccgacatactaaaggccccaagacagacccaagaaagtggtccatacct ttttgctgacatcttggacttcaagaagctacaggacttgatagtatcgtacaatatagactggatcattcattttagtg ccctactgagcgccgtgggggagaataacgtccctttggcaatgagggttaatatagaaggccttcataatgtcctagag ctagctaaacagtataaactcaagatctttgtaccaagtactataggggcctttggtccggactcaccacgtaatcccac cccagacctgtgtatacagagaccaagaaccatatacggagtctcaaaagtacacgctgagctaatgggagagtattact tttacaaattcgggttggacttcaggagtctacgatttcccggggtcatatctgctgacacacacccaggaggagggaca actgactacgccgtacagatatttcacgacgcactaaagacgggagagtttgattgttacctccgggaggacaccatgct cccgatgatgtacatagatgattgtctcagatctatcgtggaattcatggagacgccaagcgaacgcctcacaatgcgta cctataatgtgtccgctatgagttttacgccagcggaaattgcagacgcagtacgaaaatatgtgccaaatttagctgta acatacaaaccagacaaaaggcaaagtatagccgattcttggccaatgcgtttcgatgactccaacgcccgtcgggactg gggctggaaacatcatatggaaatagatgacttatgtcgggctatgtttgactatctaantatttatactattatcatga gtgcatttttgattcactaa |
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Protein
| Protein ID | pfu_aug2.0_4.1_13353.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13353.t1 MFRSRVMSVPLGLLCRCKAREVQRASKILRLVTASPVQTVRHFNGVNEPHQQYEVSHAHPRVLITGSLGQLGTGLAKVLR SRYGRNNVIMSDILKAPRQTQESGPYLFADILDFKKLQDLIVSYNIDWIIHFSALLSAVGENNVPLAMRVNIEGLHNVLE LAKQYKLKIFVPSTIGAFGPDSPRNPTPDLCIQRPRTIYGVSKVHAELMGEYYFYKFGLDFRSLRFPGVISADTHPGGGT TDYAVQIFHDALKTGEFDCYLREDTMLPMMYIDDCLRSIVEFMETPSERLTMRTYNVSAMSFTPAEIADAVRKYVPNLAV TYKPDKRQSIADSWPMRFDDSNARRDWGWKHHMEIDDLCRAMFDYLXIYTIIMSAFLIH |
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