Gene
| Gene Model ID | pfu_aug2.0_4.1_13354 |
|---|---|
| Locus | scaffold4.1 : 785324 ... 786812 : - |
| To GenomeBrowser | scaffold4.1:785324..786812 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_108.1_50636 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protocatechuate -dioxygenase subunit beta | GO:0003824 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13354.t1 | 1 | 1 | Dioxygenase_C | 9 | 137 | 2.2e-25 | 88.9 | 2.7e-28 | 5.8e-25 | 87.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13354.t1 | gi|260827102|ref|XP_002608504.1| | hypothetical protein BRAFLDRAFT_92414 [Branchiostoma floridae] | 4.0e-18 |
| pfu_aug2.0_4.1_13354.t1 | gi|497108926|ref|WP_009474041.1| | MULTISPECIES: protocatechuate 3,4-dioxygenase subunit beta [Rhodococcus] | 9.0e-17 |
| pfu_aug2.0_4.1_13354.t1 | gi|83716264|ref|YP_439316.1| | 3.0e-16 | |
| pfu_aug2.0_4.1_13354.t1 | gi|527108518|ref|WP_020909279.1| | protocatechuate 3,4-dioxygenase subunit beta [Rhodococcus erythropolis] | 3.0e-15 |
| pfu_aug2.0_4.1_13354.t1 | gi|53716653|ref|YP_105657.1| | 9.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13354.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13354.t1 atgccgacaccccccgatgacatagggccgttttaccgccctcgtccccctccccttctccagaaatgtcctgtttgccg agggacgtacagacgacaccatcttattgttaggggtagagttttgagtgatgactgtaagacgccactaccttatacgg ttattgaagtctggcaagccgaccaactgggaagatacgacaccgcattggacctcagaggatatttccacacagaccga aacggttattacgaatttacaacagtgcgtcccggaaactatagaataagaggatatagacctgctcatattcattttta cattccatcacaaaaaggacatcgtggtgtgtttacacagatgtacttctctggagaccctttccttggccgtaacgaca cgtgtcagaaatgtaactcccacagaagagatttacatgtaacaatgtatacggattgtgaccgtgttggtttttgtatg gattatgtctggtttcccattatattagccagggggtcaggagtttccacgttggaaaccgaagtcctccagcgcagacg acagatgacgcgggtttttatgcagcagaggaggagtagtcctgttgcatggcaagatgttcttcttccccgaagagctg caagttctttgagaattcacaattatttgagatcaccgagaatagcacctagaatagagtacgacatgggaccttatcaa caatattatacaagacacagagatcggtacaatggaccaaacaatttctggttttcatcaagagaacccagttatgatat gtacatgtattataaatga |
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Protein
| Protein ID | pfu_aug2.0_4.1_13354.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13354.t1 MPTPPDDIGPFYRPRPPPLLQKCPVCRGTYRRHHLIVRGRVLSDDCKTPLPYTVIEVWQADQLGRYDTALDLRGYFHTDR NGYYEFTTVRPGNYRIRGYRPAHIHFYIPSQKGHRGVFTQMYFSGDPFLGRNDTCQKCNSHRRDLHVTMYTDCDRVGFCM DYVWFPIILARGSGVSTLETEVLQRRRQMTRVFMQQRRSSPVAWQDVLLPRRAASSLRIHNYLRSPRIAPRIEYDMGPYQ QYYTRHRDRYNGPNNFWFSSREPSYDMYMYYK |
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