Gene
| Gene Model ID | pfu_aug2.0_4.1_13355 |
|---|---|
| Locus | scaffold4.1 : 790472 ... 791592 : - |
| To GenomeBrowser | scaffold4.1:790472..791592 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_108.1_50635 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protocatechuate -dioxygenase subunit beta | GO:0006725 GO:0016491 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13355.t1 | 1 | 1 | Dioxygenase_C | 33 | 201 | 1.6e-28 | 99.2 | 5.7e-32 | 2.1e-28 | 98.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13355.t1 | gi|260806263|ref|XP_002598004.1| | hypothetical protein BRAFLDRAFT_79769 [Branchiostoma floridae] | 3.0e-20 |
| pfu_aug2.0_4.1_13355.t1 | gi|260785205|ref|XP_002587653.1| | hypothetical protein BRAFLDRAFT_96495 [Branchiostoma floridae] | 1.0e-18 |
| pfu_aug2.0_4.1_13355.t1 | gi|502157721|ref|WP_012722671.1| | protocatechuate 3,4-dioxygenase subunit beta [Pseudomonas fluorescens] | 8.0e-16 |
| pfu_aug2.0_4.1_13355.t1 | gi|499372084|ref|WP_011059662.1| | MULTISPECIES: protocatechuate 3,4-dioxygenase subunit beta [Pseudomonas fluorescens group] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13355.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13355.t1 atggagaagctgtacttcgtgttgtttttggtgaaagtagtacagtcagttgatggccaggaatctgagtcagtatgtcg tccgactccccatgacattgttggaccttactatttccctcgtcctccccctctaatacagtactgtaccggcgatccgg agagccatcgcttagagaacatgattgtccgtggtcacgtgtacaaggctgattgcctcacgccgctccctcgggtcaga attgaggtgtggcaggcggaccatgctggggtgtatcagttttccacacagtgcagaggatttattcgtacagacgcgtt gggatattacgaattttcgacaattcatccgggacaatatactattgaccgacaaaacttgatgtatcggccatcgcaca tccacttccgggttttcggtcgtcgtcgtcataaaggtctgattacgcagctttattttgcgggagatccgtatttgggg aggaacgactcatgttccatttgctcctcgggaaatccagatctgatcaaacaaccgaagcaactgtgtgacgatgcgga caagtattgtatggacgtagtggactttgacattgtattagagcgaggcagcggtacttctgtgacgcaagaaggtccaa atgacatcacggagtag |
|
Protein
| Protein ID | pfu_aug2.0_4.1_13355.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13355.t1 MEKLYFVLFLVKVVQSVDGQESESVCRPTPHDIVGPYYFPRPPPLIQYCTGDPESHRLENMIVRGHVYKADCLTPLPRVR IEVWQADHAGVYQFSTQCRGFIRTDALGYYEFSTIHPGQYTIDRQNLMYRPSHIHFRVFGRRRHKGLITQLYFAGDPYLG RNDSCSICSSGNPDLIKQPKQLCDDADKYCMDVVDFDIVLERGSGTSVTQEGPNDITE |
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