Gene
| Gene Model ID | pfu_aug2.0_4.1_13359 |
|---|---|
| Locus | scaffold4.1 : 855103 ... 871557 : + |
| To GenomeBrowser | scaffold4.1:855103..871557 |
| Genes list of scaffold | scaffold4.1 |
| Synonym | pfu_aug1.0_108.1_50630 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4.1_13359.t2 | 5 | 1 | WD40 | 139 | 172 | 1.4e-22 | 78.6 | 6.2e-05 | 0.23 | 11.4 |
| pfu_aug2.0_4.1_13359.t2 | 2 | 1 | zf-CCHC | 387 | 399 | 2.0e-06 | 27.4 | 4.5e-06 | 0.017 | 15.0 |
| pfu_aug2.0_4.1_13359.t2 | 2 | 2 | zf-CCHC | 408 | 423 | 2.0e-06 | 27.4 | 1.2e-05 | 0.043 | 13.7 |
| pfu_aug2.0_4.1_13359.t2 | 5 | 2 | WD40 | 499 | 534 | 1.4e-22 | 78.6 | 4.2e-08 | 0.00015 | 21.4 |
| pfu_aug2.0_4.1_13359.t2 | 5 | 3 | WD40 | 558 | 583 | 1.4e-22 | 78.6 | 1.4e-07 | 0.00051 | 19.8 |
| pfu_aug2.0_4.1_13359.t2 | 5 | 4 | WD40 | 606 | 630 | 1.4e-22 | 78.6 | 5.1e-07 | 0.0019 | 18.0 |
| pfu_aug2.0_4.1_13359.t2 | 5 | 5 | WD40 | 648 | 666 | 1.4e-22 | 78.6 | 0.00034 | 1.3 | 9.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4.1_13359.t2 | gi|617367431|ref|XP_007568423.1| | PREDICTED: WD repeat-containing protein 70 [Poecilia formosa] | 0.0 |
| pfu_aug2.0_4.1_13359.t2 | gi|658878961|ref|XP_008422463.1| | PREDICTED: WD repeat-containing protein 70 isoform X3 [Poecilia reticulata] | 0.0 |
| pfu_aug2.0_4.1_13359.t2 | gi|118404992|ref|NP_001072792.1| | WD repeat-containing protein 70 [Xenopus (Silurana) tropicalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4.1_13359.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13359.t1 atgtctggccaggaaaaaacatcaggaaatgaaaagaaagcaaggacatttgattttatggccatgttccaagaggcaag gcaaacagcaatagacagaacacaaggtgcatttgatgtggtaactgaaggtgaaaacggcaagtcagattcaccatcaa atcaaacatcagatatcaaatctgattccacaacagcaaagctgcatatgaaagagaaaagtaaaggcaatgaagtggag gaggatgatttgattggtcctcctttaccctcagcaacaaaagaggaggaggaggatgacatgataggacctccccttcc tccgggtatgcttaccgctacaccaacaataaagggagatcactctgatgacgatgaggaggaggaggaagaagagagtt tagagaagaaaattcccagcagtcatgaaataacattgaaccatggatctaagcttgtttcagctttagctctggatcca gcaggtgccaggcttgtcacagggggacatgattttgaggtgcgtttcttcgactttgcaggaatggatgcttccttaca gtcattcagatctataaggccatgcgagagatggacgaaatggcttcgtagtttcgagctgtatgcgcttgggaaagggg tgtctcaggccgatcagaagaaagcgttgcttcttcactgtgcagggaatgatgttcaagatatttactttactcttaat gaacctgacccgggagaaggtcaatctgtatttgatgttacgaagaagttgcttaccgattatttttcgccccttacgaa cgttccttacgagagatcagtatttcgatccacagcccagttagctaatgaaaccattgagcaattcgtgacacggttac gcgaaagggcaaaatactgtaactttggtgcaggggaggatgaaatgatacgggatcaaataattgaaaagtgtacttcg catagattacgtagaaaattgttagaagcaaaagatcttacgttagagaaattacgtcaaacggcacaggcaattgaatt tgcagaaaagcaagcgatggcgatggaaggtcaagctaccagtacacaacctaccgatcagggaaatgttaaccaaattc gacataaagggaaaccacctgcgaaatttgctcaagataagaaaagtagcctgttatgctatgcgtgcggtaaaagaggt cacatacgaacagaccccaaatgtccggctaaagacaaagcttgtcttaaatgcaaccgaattggacattttaagaaaat gtgtaaaggtactggaaaagataaaggacaacgtaaaggcggtagcgttagaaatgttaatgaaagtcaggatgtcgcgt caaatgctgatagtaatgaaaccggaagtagcggaatgtatgcgtttcataatgtggcaaggagactcataacttgtaga catagcaagtactggagggatggccatgtggtgttagaaagtgccaaaggagacccatatctggtagacatagccagtac taagggtcatactgcaatgttaaactgtggaggatggaatcctaaagttagagaggagttcatgacatgttctaatgatg gaactgtaaggttatgggatgtcaacatggaaggtaaaaagcacaaaaatataatgaaacctcggtcacaacaaggaaga aagataactcctacaacctgtgcatacagttacgatgggagatggtgtgcatgtgcttgtgaggatgggtcaatacaaat ctgggatcataataaaatgtttgtaaatgtagcgatgctgaacaggaattgtcacatgaatggtagtgatacgtcatgtt tatgtttctcatatgatggaagaattctggcatcaagaggtggtgatgatacactgaagctttgggacttgaggaatttt aaaaagccattaaatgtcaaagaaaatttgacaaatttctttccagtaactgactgtgtatttagtccagatgataggat gatcattacaggtacatctgtaaaaaaaggcggaaacggaaaactgtacttcctggatagagaaacctttaataccgtgt caactatggagttcagtgacaccagtctattacaatgtggtgtgacagggattatttctacagattgccttcagacatat gcattacccatgtttcgacaaggtcgtccaagtagtactaaaacacatgaggagaagataagaaaagatccagtcaagtc taaaaggccggatcttcccatatacggacctggtgaaggtggcagagttggagccaaaggtgctacactttctcagtatg tcgctcagagcttagtgaagaggaaacctgataaatacgaaaacgatccaagaacagccatcttacgacatgcaaaggct gcagcagagaatcccttctacatagacagagcatacaacaaaggcacacatcctacgatactgagagaggaggtggagga aaaggaggaggaagatgaggaaccagagtggaagaaaacaaagatcggataa |
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| Transcript ID | pfu_aug2.0_4.1_13359.t2 |
| Definition | - |
>pfu_aug2.0_4.1_13359.t2 atgaaatgaaatgaaaagaaagcaaggacatttgattttatggccatgttccaagaggcaaggcaaacagcaatagacag aacacaaggtgcatttgatgtggtaactgaaggtgaaaacggcaagtcagattcaccatcaaatcaaacatcagatatca aatctgattccacaacagcaaagctgcatatgaaagagaaaagtaaaggcaatgaagtggaggaggatgatttgattggt cctcctttaccctcagcaacaaaagaggaggaggaggatgacatgataggacctccccttcctccgggtatgcttaccgc tacaccaacaataaagggagatcactctgatgacgatgaggaggaggaggaagaagagagtttagagaagaaaattccca gcagtcatgaaataacattgaaccatggatctaagcttgtttcagctttagctctggatccagcaggtgccaggcttgtc acagggggacatgattttgaggtgcgtttcttcgactttgcaggaatggatgcttccttacagtcattcagatctataag gccatgcgagagatggacgaaatggcttcgtagtttcgagctgtatgcgcttgggaaaggggtgtctcaggccgatcaga agaaagcgttgcttcttcactgtgcagggaatgatgttcaagatatttactttactcttaatgaacctgacccgggagaa ggtcaatctgtatttgatgttacgaagaagttgcttaccgattatttttcgccccttacgaacgttccttacgagagatc agtatttcgatccacagcccagttagctaatgaaaccattgagcaattcgtgacacggttacgcgaaagggcaaaatact gtaactttggtgcaggggaggatgaaatgatacgggatcaaataattgaaaagtgtacttcgcatagattacgtagaaaa ttgttagaagcaaaagatcttacgttagagaaattacgtcaaacggcacaggcaattgaatttgcagaaaagcaagcgat ggcgatggaaggtcaagctaccagtacacaacctaccgatcagggaaatgttaaccaaattcgacataaagggaaaccac ctgcgaaatttgctcaagataagaaaagtagcctgttatgctatgcgtgcggtaaaagaggtcacatacgaacagacccc aaatgtccggctaaagacaaagcttgtcttaaatgcaaccgaattggacattttaagaaaatgtgtaaaggtactggaaa agataaaggacaacgtaaaggcggtagcgttagaaatgttaatgaaagtcaggatgtcgcgtcaaatgctgatagtaatg aaaccggaagtagcggaatgtatgcgtttcataatgtggcaaggagactcataacttgtagacatagcaagtactggagg gatggccatgtggtgttagaaagtgccaaaggagacccatatctggtagacatagccagtactaagggtcatactgcaat gttaaactgtggaggatggaatcctaaagttagagaggagttcatgacatgttctaatgatggaactgtaaggttatggg atgtcaacatggaaggtaaaaagcacaaaaatataatgaaacctcggtcacaacaaggaagaaagataactcctacaacc tgtgcatacagttacgatgggagatggtgtgcatgtgcttgtgaggatgggtcaatacaaatctgggatcataataaaat gtttgtaaatgtagcgatgctgaacaggaattgtcacatgaatggtagtgatacgtcatgtttatgtttctcatatgatg gaagaattctggcatcaagaggtggtgatgatacactgaagctttgggacttgaggaattttaaaaagccattaaatgtc aaagaaaatttgacaaatttctttccagtaactgactgtgtatttagtccagatgataggatgatcattacagcatatgc attacccatgtttcgacaaggtcgtccaagtagtactaaaacacatgaggagaagataagaaaagatccagtcaagtcta aaaggccggatcttcccatatacggacctggtgaaggtggcagagttggagccaaaggtgctacactttctcagtatgtc gctcagagcttagtgaagaggaaacctgataaatacgaaaacgatccaagaacagccatcttacgacatgcaaaggctgc agcagagaatcccttctacatagacagagcatacaacaaaggcacacatcctacgatactgagagaggaggtggaggaaa aggaggaggaagatgaggaaccagagtggaagaaaacaaagatcggataa |
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Protein
| Protein ID | pfu_aug2.0_4.1_13359.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4.1_13359.t1 MSGQEKTSGNEKKARTFDFMAMFQEARQTAIDRTQGAFDVVTEGENGKSDSPSNQTSDIKSDSTTAKLHMKEKSKGNEVE EDDLIGPPLPSATKEEEEDDMIGPPLPPGMLTATPTIKGDHSDDDEEEEEEESLEKKIPSSHEITLNHGSKLVSALALDP AGARLVTGGHDFEVRFFDFAGMDASLQSFRSIRPCERWTKWLRSFELYALGKGVSQADQKKALLLHCAGNDVQDIYFTLN EPDPGEGQSVFDVTKKLLTDYFSPLTNVPYERSVFRSTAQLANETIEQFVTRLRERAKYCNFGAGEDEMIRDQIIEKCTS HRLRRKLLEAKDLTLEKLRQTAQAIEFAEKQAMAMEGQATSTQPTDQGNVNQIRHKGKPPAKFAQDKKSSLLCYACGKRG HIRTDPKCPAKDKACLKCNRIGHFKKMCKGTGKDKGQRKGGSVRNVNESQDVASNADSNETGSSGMYAFHNVARRLITCR HSKYWRDGHVVLESAKGDPYLVDIASTKGHTAMLNCGGWNPKVREEFMTCSNDGTVRLWDVNMEGKKHKNIMKPRSQQGR KITPTTCAYSYDGRWCACACEDGSIQIWDHNKMFVNVAMLNRNCHMNGSDTSCLCFSYDGRILASRGGDDTLKLWDLRNF KKPLNVKENLTNFFPVTDCVFSPDDRMIITGTSVKKGGNGKLYFLDRETFNTVSTMEFSDTSLLQCGVTGIISTDCLQTY ALPMFRQGRPSSTKTHEEKIRKDPVKSKRPDLPIYGPGEGGRVGAKGATLSQYVAQSLVKRKPDKYENDPRTAILRHAKA AAENPFYIDRAYNKGTHPTILREEVEEKEEEDEEPEWKKTKIG |
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| Protein ID | pfu_aug2.0_4.1_13359.t2 |
| Definition | - |
>pfu_aug2.0_4.1_13359.t2 MKXNEKKARTFDFMAMFQEARQTAIDRTQGAFDVVTEGENGKSDSPSNQTSDIKSDSTTAKLHMKEKSKGNEVEEDDLIG PPLPSATKEEEEDDMIGPPLPPGMLTATPTIKGDHSDDDEEEEEEESLEKKIPSSHEITLNHGSKLVSALALDPAGARLV TGGHDFEVRFFDFAGMDASLQSFRSIRPCERWTKWLRSFELYALGKGVSQADQKKALLLHCAGNDVQDIYFTLNEPDPGE GQSVFDVTKKLLTDYFSPLTNVPYERSVFRSTAQLANETIEQFVTRLRERAKYCNFGAGEDEMIRDQIIEKCTSHRLRRK LLEAKDLTLEKLRQTAQAIEFAEKQAMAMEGQATSTQPTDQGNVNQIRHKGKPPAKFAQDKKSSLLCYACGKRGHIRTDP KCPAKDKACLKCNRIGHFKKMCKGTGKDKGQRKGGSVRNVNESQDVASNADSNETGSSGMYAFHNVARRLITCRHSKYWR DGHVVLESAKGDPYLVDIASTKGHTAMLNCGGWNPKVREEFMTCSNDGTVRLWDVNMEGKKHKNIMKPRSQQGRKITPTT CAYSYDGRWCACACEDGSIQIWDHNKMFVNVAMLNRNCHMNGSDTSCLCFSYDGRILASRGGDDTLKLWDLRNFKKPLNV KENLTNFFPVTDCVFSPDDRMIITAYALPMFRQGRPSSTKTHEEKIRKDPVKSKRPDLPIYGPGEGGRVGAKGATLSQYV AQSLVKRKPDKYENDPRTAILRHAKAAAENPFYIDRAYNKGTHPTILREEVEEKEEEDEEPEWKKTKIG |
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