Gene
| Gene Model ID | pfu_aug2.0_40.1_00098 |
|---|---|
| Locus | scaffold40.1 : 40266 ... 69582 : + |
| To GenomeBrowser | scaffold40.1:40266..69582 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_11733.1_60936 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| matrix metalloproteinase-17 | GO:0008233 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00098.t2 | 2 | 1 | Peptidase_M10 | 16 | 101 | 1.8e-32 | 112.1 | 2.1e-35 | 4.5e-32 | 110.8 |
| pfu_aug2.0_40.1_00098.t2 | 4 | 1 | Hemopexin | 147 | 186 | 1.1e-32 | 111.5 | 1.9e-11 | 4.0e-08 | 32.8 |
| pfu_aug2.0_40.1_00098.t2 | 4 | 2 | Hemopexin | 195 | 240 | 1.1e-32 | 111.5 | 7.0e-14 | 1.5e-10 | 40.6 |
| pfu_aug2.0_40.1_00098.t2 | 4 | 3 | Hemopexin | 246 | 282 | 1.1e-32 | 111.5 | 9.6e-08 | 0.0002 | 21.0 |
| pfu_aug2.0_40.1_00098.t2 | 2 | 2 | Peptidase_M10 | 293 | 306 | 1.8e-32 | 112.1 | 3.1 | 6600.0 | -3.4 |
| pfu_aug2.0_40.1_00098.t2 | 4 | 4 | Hemopexin | 295 | 338 | 1.1e-32 | 111.5 | 5.2e-10 | 1.1e-06 | 28.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00098.t2 | gi|524903322|ref|XP_005107864.1| | PREDICTED: matrix metalloproteinase-17-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_40.1_00098.t2 | gi|241713115|ref|XP_002413482.1| | matrix metalloproteinase, putative [Ixodes scapularis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00098.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00098.t1 atggaggggccgtgtaatagacatctaagtcatacagacgacagaactgaccggtccagcataaaatatggttgtgataa ttgctttgttagacagaatagttcatcgtctgcatcttctaaaccatcatcgtcgtcgttgtcatctgcaaatgcatcag catcgacaaattcagaaattagatgtgaaactgtaagaaaaagtggaattatcaaatctttttcagagaggatgtatcag tggagtataccaccccctcgggcgttgttagtgactatattactatgtatgtatggggactatgtgtatggccaagccca gatagagggggaggctatgaaatacctcagtcactttcattatctacccaaagccagtcgagagcaggagaaccttttac atggagaaaatatcaaagaagccattaaaaatcttcaaaggatgggcaacataccggtcacagggaaagtggacgaacgg acacggacattgatgcataaaaaacggtgcggggtcgccgaccctgtggacgaactattcggaacagggcgtggtcgaag gaggaggaaaagatacgtgctagctcccaccaagtggaaaaaatatgatctcacatatagaatattgaactacactcctg atctcccagtatactatgtccggaaagctttgctggacgcctttcaagtttggagcaccgttaccaagctgacttttaca gagtccatgcatggtgatgctgacattatgatacagttcgcctccggataccataaagatgggtatccattcgacggaaa aggtttgattttggctcacgcatttttccccggcaaaggtaaaggtggcgatacacattttgacgaggccgagcattgga ctttcaattcgtcagagacaggagttgacctgtttatggttgctgcccatgagtttggccatgccctaggcttaagccat agtaacgagccaggggcgctgatgtatccatggtaccagggttatgaccccaacttcaagctgccctatgacgacatccg gggaatacagacaatatatggcggtgttgggtctttgccgaggcccccaccacaaaccccccgtccgaggacaccaaaca tctaccctaccggtgggggagggggaggaggacggcaaccccgacccaagggtccaatcgacccctgtaatgctactttc gatgccatttctgtgatacgtcaagaagtcttcttgttcattgggaagtacttttggcgccttgattcaagaggactagt taaaggagaacctctacaaatccattcgttctggtacaaacttcctaaagagatcgaccattttgatgctgtatatgaga gcaagaaagacgggaaaatagttttctttgttggtgatagatactggcgattcgacggtaactaccctgtggtcaacaca cccaaaaagggaaatcctattaccgatttcggaattcctgcggatatcaaaaagatagacgccgtgtttatatggggttt taatcagaggacgtacttggttagcggggatatgtactggaaactccaggaggaccaggattatgtggaaccggactatc ccagggatatgaacatttggaaaaacgtcccggttccattggatactgcattccaatactgggatggaaaaacttacttt ttcaaagacaagatggtgtacaaattctacgatatgaaaatgcgagtggacaagaagtatcccaaaccaattaagaacaa ttttcttggctgtaaccaagcgcatacgtatatgacaatagacggcgaagctgaaaaactcaaaaagtctgacaattcct cggataaaatctcccacagtgtagttttatcatgtctatgtttaatatttttctatacattcaaatcaaattgtggttct tga |
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| Transcript ID | pfu_aug2.0_40.1_00098.t2 |
| Definition | - |
>pfu_aug2.0_40.1_00098.t2 atgtcttggaaaaatcgtaaaaatggcagatcagcattctttggtttgattttggctcacgcatttttccccggcaaagg taaaggtggcgatacacattttgacgaggccgagcattggactttcaattcgtcagagacaggagttgacctgtttatgg ttgctgcccatgagtttggccatgccctaggcttaagccatagtaacgagccaggggcgctgatgtatccatggtaccag ggttatgaccccaacttcaagctgccctatgacgacatccggggaatacagacaatatatggcggtgttgggtctttgcc gaggcccccaccacaaaccccccgtccgaggacaccaaacatctaccctaccggtgggggagggggaggaggacggcaac cccgacccaagggtccaatcgacccctgtaatgctactttcgatgccatttctgtgatacgtcaagaagtcttcttgttc attgggaagtacttttggcgccttgattcaagaggactagttaaaggagaacctctacaaatccattcgttctggtacaa acttcctaaagagatcgaccattttgatgctgtatatgagagcaagaaagacgggaaaatagttttctttgttggtgata gatactggcgattcgacggtaactaccctgtggtcaacacacccaaaaagggaaatcctattaccgatttcggaattcct gcggatatcaaaaagatagacgccgtgtttatatggggttttaatcagaggacgtacttggttagcggggatatgtactg gaaactccaggaggaccaggattatgtggaaccggactatcccagggatatgaacatttggaaaaacgtcccggttccat tggatactgcattccaatactgggatggaaaaacttactttttcaaagacaagatggtgtacaaattctacgatatgaaa atgcgagtggacaagaagtatcccaaaccaattaagaacaattttcttggctgtaaccaagcgcatacgtatatgacaat agacggcgaagctgaaaaactcaaaaagtctgacaattcctcggataaaatctcccacagtgtagttttatcatgtctat gtttaatatttttctatacattcaaatcaaattgtggttcttga |
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Protein
| Protein ID | pfu_aug2.0_40.1_00098.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00098.t1 MEGPCNRHLSHTDDRTDRSSIKYGCDNCFVRQNSSSSASSKPSSSSLSSANASASTNSEIRCETVRKSGIIKSFSERMYQ WSIPPPRALLVTILLCMYGDYVYGQAQIEGEAMKYLSHFHYLPKASREQENLLHGENIKEAIKNLQRMGNIPVTGKVDER TRTLMHKKRCGVADPVDELFGTGRGRRRRKRYVLAPTKWKKYDLTYRILNYTPDLPVYYVRKALLDAFQVWSTVTKLTFT ESMHGDADIMIQFASGYHKDGYPFDGKGLILAHAFFPGKGKGGDTHFDEAEHWTFNSSETGVDLFMVAAHEFGHALGLSH SNEPGALMYPWYQGYDPNFKLPYDDIRGIQTIYGGVGSLPRPPPQTPRPRTPNIYPTGGGGGGGRQPRPKGPIDPCNATF DAISVIRQEVFLFIGKYFWRLDSRGLVKGEPLQIHSFWYKLPKEIDHFDAVYESKKDGKIVFFVGDRYWRFDGNYPVVNT PKKGNPITDFGIPADIKKIDAVFIWGFNQRTYLVSGDMYWKLQEDQDYVEPDYPRDMNIWKNVPVPLDTAFQYWDGKTYF FKDKMVYKFYDMKMRVDKKYPKPIKNNFLGCNQAHTYMTIDGEAEKLKKSDNSSDKISHSVVLSCLCLIFFYTFKSNCGS |
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| Protein ID | pfu_aug2.0_40.1_00098.t2 |
| Definition | - |
>pfu_aug2.0_40.1_00098.t2 MSWKNRKNGRSAFFGLILAHAFFPGKGKGGDTHFDEAEHWTFNSSETGVDLFMVAAHEFGHALGLSHSNEPGALMYPWYQ GYDPNFKLPYDDIRGIQTIYGGVGSLPRPPPQTPRPRTPNIYPTGGGGGGGRQPRPKGPIDPCNATFDAISVIRQEVFLF IGKYFWRLDSRGLVKGEPLQIHSFWYKLPKEIDHFDAVYESKKDGKIVFFVGDRYWRFDGNYPVVNTPKKGNPITDFGIP ADIKKIDAVFIWGFNQRTYLVSGDMYWKLQEDQDYVEPDYPRDMNIWKNVPVPLDTAFQYWDGKTYFFKDKMVYKFYDMK MRVDKKYPKPIKNNFLGCNQAHTYMTIDGEAEKLKKSDNSSDKISHSVVLSCLCLIFFYTFKSNCGS |
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