Gene
| Gene Model ID | pfu_aug2.0_40.1_00100 |
|---|---|
| Locus | scaffold40.1 : 77716 ... 93225 : - |
| To GenomeBrowser | scaffold40.1:77716..93225 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_20838.1_47413 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| short-chain specific acyl- mitochondrial | GO:0003995 GO:0050660 GO:0055114 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00100.t1 | 1 | 1 | Acyl-CoA_dh_N | 36 | 146 | 2.4e-33 | 115.0 | 1.3e-36 | 4.8e-33 | 114.1 |
| pfu_aug2.0_40.1_00100.t1 | 1 | 1 | Acyl-CoA_dh_M | 151 | 202 | 3.7e-17 | 61.5 | 2.0e-20 | 7.5e-17 | 60.5 |
| pfu_aug2.0_40.1_00100.t1 | 1 | 1 | Acyl-CoA_dh_1 | 260 | 343 | 4.3e-24 | 85.3 | 2.3e-27 | 8.4e-24 | 84.3 |
| pfu_aug2.0_40.1_00100.t1 | 1 | 1 | Acyl-CoA_dh_2 | 273 | 348 | 2.8e-12 | 47.0 | 1.2e-15 | 4.4e-12 | 46.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00100.t1 | gi|524899715|ref|XP_005106286.1| | PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_40.1_00100.t1 | gi|676488437|ref|XP_009064616.1| | hypothetical protein LOTGIDRAFT_131888, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_40.1_00100.t1 | gi|260834039|ref|XP_002612019.1| | hypothetical protein BRAFLDRAFT_124791 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_40.1_00100.t1 | gi|585642126|ref|XP_006811132.1| | PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform X2 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_40.1_00100.t1 | gi|291220761|ref|XP_002730394.1| | PREDICTED: short-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00100.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00100.t1 atggcgaacaagtgtctgctacgcttcgggaacacgttatcaaaacttagccgatcaaatgcggtacggcatggacggtg tttgtcgagtctggcagagttgcctgacactcacaagatgttacagaagacgtgtagggactttgcagataatgagctta ttcctatagcagcaaaactagacaaagaacatatcttccctgctgaacagattaagaagatgggagagatgggtttgatg tgtgtagatataccagaggaagagggcggtacggggctcgactacctagcttacgcaatagccatggaggagattagccg aggatgtgcttctactggttgtatcatgagtgttaacaattctctttatcttggtccaataaaacactgggctaaccccg agcagaaggagaagtaccagacaccgttccttcacggagataaagtgggatgctttgctctcagtgaacctggaaatggc agtgatgcaggggcagcttctacagtagcaaaattagacggtgattcttggatcttaaacggcacaaaggcatggatcac caacggttacgaggcagaggcttcagtggtttttgccacaacagataaaagtaaaaaacataagggtattagtgcattta tagtgccaaaaccaacagagggattgtcattaggaaagaaagaagataaactaggaatcaaagctacctctacatgttac ctgatatttgaagactgtagaataccaagagaaaatctcctgggacccgagggttttggatttaaaattgccatgtcaac cctagatgctggtagaataggtatagctgcccagggcttaggtatagcacaggcagccttcgagacagctatagagtatg cccagaagagagaggctttcggatcacctatatcaaagatgcaaacagtccagaccaagttagcagacatggctttatca gtagaaagtgcccgtcttcttacttataaggcagctatgttaaaagacgcaggcaaacccttcactaaggacacgggaca tgaaaattatctttatccgaattataaagttgattatgtaacagaaataccattctcgcagtttccctgcacgcgatag |
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Protein
| Protein ID | pfu_aug2.0_40.1_00100.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00100.t1 MANKCLLRFGNTLSKLSRSNAVRHGRCLSSLAELPDTHKMLQKTCRDFADNELIPIAAKLDKEHIFPAEQIKKMGEMGLM CVDIPEEEGGTGLDYLAYAIAMEEISRGCASTGCIMSVNNSLYLGPIKHWANPEQKEKYQTPFLHGDKVGCFALSEPGNG SDAGAASTVAKLDGDSWILNGTKAWITNGYEAEASVVFATTDKSKKHKGISAFIVPKPTEGLSLGKKEDKLGIKATSTCY LIFEDCRIPRENLLGPEGFGFKIAMSTLDAGRIGIAAQGLGIAQAAFETAIEYAQKREAFGSPISKMQTVQTKLADMALS VESARLLTYKAAMLKDAGKPFTKDTGHENYLYPNYKVDYVTEIPFSQFPCTR |
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