Gene
| Gene Model ID | pfu_aug2.0_40.1_00101 |
|---|---|
| Locus | scaffold40.1 : 157357 ... 193115 : - |
| To GenomeBrowser | scaffold40.1:157357..193115 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_5181.1_30887 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lim homeobox protein lhx5 | GO:0001658 GO:0001702 GO:0001704 GO:0005488 GO:0005622 GO:0006355 GO:0006928 GO:0007267 GO:0009880 GO:0009948 GO:0010842 GO:0021510 GO:0021549 GO:0021953 GO:0022603 GO:0030900 GO:0035846 GO:0040011 GO:0040019 GO:0042221 GO:0043009 GO:0048522 GO:0051674 GO:0060065 GO:0072049 GO:0072050 GO:0072077 GO:0072178 GO:0072273 GO:0090184 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00101.t1 | 2 | 1 | LIM | 4 | 59 | 6.1e-33 | 112.6 | 9.1e-19 | 2.7e-15 | 56.1 |
| pfu_aug2.0_40.1_00101.t1 | 2 | 2 | LIM | 63 | 120 | 6.1e-33 | 112.6 | 1.3e-20 | 3.8e-17 | 62.0 |
| pfu_aug2.0_40.1_00101.t1 | 1 | 1 | Homeobox | 260 | 316 | 7.3e-20 | 70.3 | 4.5e-23 | 1.3e-19 | 69.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00101.t1 | gi|291232097|ref|XP_002736028.1| | PREDICTED: LIM/homeobox protein Lhx5-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_40.1_00101.t1 | gi|62020648|gb|AAH20470.1| | LHX1 protein, partial [Homo sapiens] | 0.0 |
| pfu_aug2.0_40.1_00101.t1 | gi|507664275|ref|XP_004707042.1| | PREDICTED: LIM/homeobox protein Lhx1 [Echinops telfairi] | 0.0 |
| pfu_aug2.0_40.1_00101.t1 | gi|744595905|ref|XP_010988830.1| | PREDICTED: LOW QUALITY PROTEIN: LIM/homeobox protein Lhx1 [Camelus dromedarius] | 0.0 |
| pfu_aug2.0_40.1_00101.t1 | gi|617442501|ref|XP_007565608.1| | PREDICTED: LIM/homeobox protein Lhx1 isoform X2 [Poecilia formosa] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00101.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00101.t1 atggtgcaatgcgccgggtgcgacagacccattttggaccgatttttgttgaacgttttagatcgtgcttggcacacgaa atgtgtgcaatgttctgactgtaaaatgatccttacggacaagtgtttttctagggaaggaaaacttttttgccgaaatg actttttccggcgtttcggaacaaagtgcgccggttgttcgcagggaatttccccaaacgacctagtacggagagctaaa aataaagtttttcatcttaagtgttttacatgcataatatgtagaaaacagttgtccacgggagaggaactctacatcat ggacgaaaaccgattcatatgtaaagaagactatattagcagcaaattacaaggatcgtcggatttagatgaagatgaca tggatctggataacggattagagaaccagacatctttatcggataaagactttagtttagacgatgataattgtgcggac atcgatagcaaggagaacattctgaccagtattccaaacaacataaataacaacaacaacagcacaaatatgaataaaaa taactctatgaattccctgccacccagccccgacccaattaaggacgagacggcgctgttaaaaatttcctctgactcga accatagtagtcaaagttgtgatacgaacggtaattctattccgccaaatgccaatgtgaccacccctgatggcgacaga tcgggggaggaaattatagagggcggaggagggggctccggggctggggccaaaagaaggggaccaagaacgactataaa agcaaaacaattagaaactttaaaagcggcgtttgctgccaccccgaaacctacacgtcatatacgggaacagctggcac aagaaaccgggctcaacatgcgggttattcaggtttggtttcaaaatcgccgatcgaaagaaaggcgaatgaagcagctt agcgcactcggtgcaagaagacacttcttccgtaacccacggcgcatgcgcgccctccgggcagggatgtcgcccagcga actcgacgatagcgatatgatgggaggtccgggattcgggtatttttcagacaatggtcaagatttttaccccggatacc aagggtataacgatttctttccgggacagggtgaagggggaccaggcggaatgaacttcttgccaccttcctcccagggg accccgcccgtcagtattgaccaacccatccatcataacggcctgggtccagagagccaatttcttcacagcgatatgat tcctccttcgtcgtcccccgagccgggccccatgcaccacgaaccacattttgttccgggtatacctccccgttccctcg ccggatccttttcgtctatatcacatccggaaatggcgggcgaagcttggtga |
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Protein
| Protein ID | pfu_aug2.0_40.1_00101.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00101.t1 MVQCAGCDRPILDRFLLNVLDRAWHTKCVQCSDCKMILTDKCFSREGKLFCRNDFFRRFGTKCAGCSQGISPNDLVRRAK NKVFHLKCFTCIICRKQLSTGEELYIMDENRFICKEDYISSKLQGSSDLDEDDMDLDNGLENQTSLSDKDFSLDDDNCAD IDSKENILTSIPNNINNNNNSTNMNKNNSMNSLPPSPDPIKDETALLKISSDSNHSSQSCDTNGNSIPPNANVTTPDGDR SGEEIIEGGGGGSGAGAKRRGPRTTIKAKQLETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSKERRMKQL SALGARRHFFRNPRRMRALRAGMSPSELDDSDMMGGPGFGYFSDNGQDFYPGYQGYNDFFPGQGEGGPGGMNFLPPSSQG TPPVSIDQPIHHNGLGPESQFLHSDMIPPSSSPEPGPMHHEPHFVPGIPPRSLAGSFSSISHPEMAGEAW |
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