Gene
| Gene Model ID | pfu_aug2.0_40.1_00102 |
|---|---|
| Locus | scaffold40.1 : 228249 ... 240065 : - |
| To GenomeBrowser | scaffold40.1:228249..240065 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_5485.1_52564 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00102.t1 | 1 | 1 | MRP-S23 | 2 | 114 | 2.5e-24 | 85.5 | 3.2e-27 | 1.2e-23 | 83.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00102.t1 | gi|584008782|ref|XP_006799348.1| | PREDICTED: 28S ribosomal protein S23, mitochondrial-like [Neolamprologus brichardi] | 2.0e-16 |
| pfu_aug2.0_40.1_00102.t1 | gi|348544597|ref|XP_003459767.1| | PREDICTED: 28S ribosomal protein S23, mitochondrial-like isoform X1 [Oreochromis niloticus] | 2.0e-16 |
| pfu_aug2.0_40.1_00102.t1 | gi|260820764|ref|XP_002605704.1| | hypothetical protein BRAFLDRAFT_279969 [Branchiostoma floridae] | 5.0e-16 |
| pfu_aug2.0_40.1_00102.t1 | gi|499043869|ref|XP_004572535.1| | PREDICTED: 28S ribosomal protein S23, mitochondrial isoform X1 [Maylandia zebra] | 5.0e-16 |
| pfu_aug2.0_40.1_00102.t1 | gi|195579090|ref|XP_002079395.1| | GD22035 [Drosophila simulans] | 4.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00102.t1 atgacagaggttcaaggtttaatccgatcaggagtgatcaaaccggaggaaaaacccgtatggtacaacgtatggaaagc attcccaccacgagatccacccatggctagacgatcagctccagactcggtagtgccggagatactatatccagaggatt tagttcgagcgaaatattacaagagatacaatgagatgatgaatgatctagacatcaggcataagtatcgagaagcaata gatttgtgttcagaggaaaactccaggtctcaacggttcattgaagaatacattaccactcacaaagctgagggcattgt cgactttgaggattttttcttgcagtttttagagaaagagcaggccagtattacagaattatataattccccagctctaa aagcagaaagaaccttgtatgtgtctggtttgccaagcaacaccagtatgtatgtactacagaaagctttcgctaagtat ggaaaaattgaggacatcaggagacagattggcgacgaaaaactaaccaatgttggaattgtgttcgaggatgcagctat tatagatagcatcttggaggagaaagaaatacagatactggatacaacagtgaatgtcatgagatattcagaactcaaga acgattctgctcctactttgaatcaggagacctaa |
|
Protein
| Protein ID | pfu_aug2.0_40.1_00102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00102.t1 MTEVQGLIRSGVIKPEEKPVWYNVWKAFPPRDPPMARRSAPDSVVPEILYPEDLVRAKYYKRYNEMMNDLDIRHKYREAI DLCSEENSRSQRFIEEYITTHKAEGIVDFEDFFLQFLEKEQASITELYNSPALKAERTLYVSGLPSNTSMYVLQKAFAKY GKIEDIRRQIGDEKLTNVGIVFEDAAIIDSILEEKEIQILDTTVNVMRYSELKNDSAPTLNQET |
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