Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_40.1_00106
Locus scaffold40.1 : 373019 ... 390172 : +
To GenomeBrowser scaffold40.1:373019..390172
Genes list of scaffold scaffold40.1
Synonym pfu_aug1.0_72209.1_20453

Manual annotation
Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_40.1_00106.t1 gi|156400120|ref|XP_001638848.1| predicted protein [Nematostella vectensis] 5.0e-18
pfu_aug2.0_40.1_00106.t1 gi|156401095|ref|XP_001639127.1| predicted protein [Nematostella vectensis] 2.0e-12
pfu_aug2.0_40.1_00106.t1 gi|528504300|ref|XP_005158243.1| PREDICTED: uncharacterized protein LOC101883708 [Danio rerio] 1.0e-10
pfu_aug2.0_40.1_00106.t1 gi|597787003|ref|XP_007256953.1| PREDICTED: uncharacterized protein LOC103025530 [Astyanax mexicanus] 1.0e-09
pfu_aug2.0_40.1_00106.t1 gi|260834041|ref|XP_002612020.1| hypothetical protein BRAFLDRAFT_86991 [Branchiostoma floridae] 1.0e-07

Transcript
Transcript IDpfu_aug2.0_40.1_00106.t1
Definition-
>pfu_aug2.0_40.1_00106.t1
atgaagggcgtggcgtcgctgattgtcattgtgattattgccatcatttttgattcagaggcgtggttgtttaataaggg
agaatccaaaacaaagaagaggatatcaaacaaatctagattgcatcacccacaacaaaaactgaaaaacacagggcaga
cacacacagatagagacacaaaagggataaggaacaccaactcttgcaaacatcaaacacaaaataccacatataagcca
tcgagaccatttggcaaccggaaatcagaaaccgaaggcatacaaaatcaggataaaacagcaaccaaagcaaacacaca
aaaaccttcaccacatgaaaagaagcgaacccccgatatggtagtgagaccggtaccaggtgcccaggaagaagatctag
atctaggtcaggatcaaggtctttgggatcctgggggtcaaggcacagcttcccatccaggaggttttcattctccacaa
ggagttcacgatacactccatcctggtcaagttcacgatactctccatcctggtcaagttcacgatactctccatcctgg
tcaagttcacgatacactccatcttggtcaagttcacgatactctccatcctggtcaagttccagttcaagctccggatc
cagatcgagctcaagtagatctccggctatttgtgtttctcaggccgttaagtggatttctgggtatatttggcctaaaa
cacaatggtgtggtagcaacaacaaaagatggtggacgatggctgatacataaaggaccaaagtttgggaaagcctctga
tacgatagtggtcaatgcaaagcatatgtcaagccaatggaagtcagctggtgctaaaagtgcaagggacggaacaacga
ttggaggactggtaaaggctggtctagcaaacaagaaatggaacctatggaatgctaagtgctgggatgccaccaaatgc
atgatgaaaaagtcgggaagacgcaagagagctacatactga

Protein
Protein IDpfu_aug2.0_40.1_00106.t1
Definition-
>pfu_aug2.0_40.1_00106.t1
MKGVASLIVIVIIAIIFDSEAWLFNKGESKTKKRISNKSRLHHPQQKLKNTGQTHTDRDTKGIRNTNSCKHQTQNTTYKP
SRPFGNRKSETEGIQNQDKTATKANTQKPSPHEKKRTPDMVVRPVPGAQEEDLDLGQDQGLWDPGGQGTASHPGGFHSPQ
GVHDTLHPGQVHDTLHPGQVHDTLHPGQVHDTLHLGQVHDTLHPGQVPVQAPDPDRAQVDLRLFVFLRPLSGFLGIFGLK
HNGVVATTKDGGRWLIHKGPKFGKASDTIVVNAKHMSSQWKSAGAKSARDGTTIGGLVKAGLANKKWNLWNAKCWDATKC
MMKKSGRRKRATY

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495