Gene
| Gene Model ID | pfu_aug2.0_40.1_00111 |
|---|---|
| Locus | scaffold40.1 : 458280 ... 463008 : + |
| To GenomeBrowser | scaffold40.1:458280..463008 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| probable atp-dependent rna helicase dhx35 | GO:0003676 GO:0005524 GO:0008026 GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00111.t1 | 1 | 1 | OB_NTP_bind | 42 | 91 | 3.0e-12 | 46.3 | 2.0e-16 | 3.0e-12 | 46.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00111.t1 | gi|719777437|ref|XP_010221284.1| | PREDICTED: probable ATP-dependent RNA helicase DHX35 [Tinamus guttatus] | 7.0e-17 |
| pfu_aug2.0_40.1_00111.t1 | gi|556959575|ref|XP_005990471.1| | PREDICTED: probable ATP-dependent RNA helicase DHX35 [Latimeria chalumnae] | 2.0e-16 |
| pfu_aug2.0_40.1_00111.t1 | gi|118405026|ref|NP_001072515.1| | probable ATP-dependent RNA helicase DHX35 [Xenopus (Silurana) tropicalis] | 3.0e-16 |
| pfu_aug2.0_40.1_00111.t1 | gi|723574013|ref|XP_010306953.1| | PREDICTED: probable ATP-dependent RNA helicase DHX35, partial [Balearica regulorum gibbericeps] | 4.0e-16 |
| pfu_aug2.0_40.1_00111.t1 | gi|449512439|ref|XP_004175946.1| | PREDICTED: probable ATP-dependent RNA helicase DHX35, partial [Taeniopygia guttata] | 4.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00111.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00111.t1 atgaagaggattctcacttcaatgatagttagggagggtaaacctagctgtcctacatggtggagtttgctgtctagcat gtctgtttcgatgtgtatcaggctccgtgcgtttgcagacctatacgatgttgactccttaaggagatgtatcacttccg gtttctttgctaacgctgcctacctccattacacaggggtttacaagacagtgagggatgaccacaccctttacatccac cctacgtctgtactgtccgtggaaaagccccctcaatgatataacggccatcaaaccagagtggctacgggaactagcac ctcatttctatcagtatga |
|
Protein
| Protein ID | pfu_aug2.0_40.1_00111.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00111.t1 MKRILTSMIVREGKPSCPTWWSLLSSMSVSMCIRLRAFADLYDVDSLRRCITSGFFANAAYLHYTGVYKTVRDDHTLYIH PTSVLSVEKPPQXYNGHQTRVATGTSTSFLSV |
|