Gene
| Gene Model ID | pfu_aug2.0_40.1_00114 |
|---|---|
| Locus | scaffold40.1 : 552270 ... 565710 : + |
| To GenomeBrowser | scaffold40.1:552270..565710 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_24894.1_33474 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00114.t1 | 1 | 1 | Fibrinogen_C | 98 | 305 | 0.0 | 201.3 | 0.0 | 0.0 | 200.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00114.t1 | gi|340377837|ref|XP_003387435.1| | PREDICTED: fibrinogen-like protein A [Amphimedon queenslandica] | 0.0 |
| pfu_aug2.0_40.1_00114.t1 | gi|340385455|ref|XP_003391225.1| | PREDICTED: ryncolin-1-like, partial [Amphimedon queenslandica] | 0.0 |
| pfu_aug2.0_40.1_00114.t1 | gi|260799840|ref|XP_002594892.1| | hypothetical protein BRAFLDRAFT_86061 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_40.1_00114.t1 | gi|260828907|ref|XP_002609404.1| | hypothetical protein BRAFLDRAFT_59661 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_40.1_00114.t1 | gi|556961599|ref|XP_005991092.1| | PREDICTED: ficolin-2-like [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00114.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00114.t1 atgattttgtcgatccacccacattcagtcatagaaaaaacatcctatactatgcatacaaaggtgatcttcctggtttg tttttcaatttcttcgttctgttatggacacaatcttcataatacaattaaagataagattggaacacttgtgaagacag cagcttggaaaaatcttggttggaaggcagaggcggacggttctatgacattatctctgttacaaaaatttaaagtacca ctcaaaagcatatttcatggaaaaggcgacatcgacccattcaaaagagtaaggtcgtgcactgacataaagaatagata ccccgatgccactagcaaagtgtataccatataccctgatggaaagactccaaaactggcatattgtgatatggtgacag agggcggcggctggacggtctttcaaaggagaactgacggaagtgttgatttctacagaggatggagtgattataagagt ggatttggaaacacatctaatgaatattggcttggaaatgaagctatacataaactaacagaaaacggaacctgcgtcct gagaattgatatggtaactctgcagaatgagagaggcttttccaaatttacaaattttaccatttcatctgaagacgtgg gttacaaaatggactatgatagatactatggaacagctggtgaaacagcttttgcgtaccacaagggtatgaagttctct actaaagacgtggataatgataaaaagggtagcaactgcgctcaggagtatacgggagcgtggtggtacaacgcttgtca taactctaatctcaatggaaaacacggcggatctggcaacacgaacatgcgatggtgggattggaaggacacgaaaaaag atgcctttatgaaggaaaccattatgatgataaaatgttaa |
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Protein
| Protein ID | pfu_aug2.0_40.1_00114.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00114.t1 MILSIHPHSVIEKTSYTMHTKVIFLVCFSISSFCYGHNLHNTIKDKIGTLVKTAAWKNLGWKAEADGSMTLSLLQKFKVP LKSIFHGKGDIDPFKRVRSCTDIKNRYPDATSKVYTIYPDGKTPKLAYCDMVTEGGGWTVFQRRTDGSVDFYRGWSDYKS GFGNTSNEYWLGNEAIHKLTENGTCVLRIDMVTLQNERGFSKFTNFTISSEDVGYKMDYDRYYGTAGETAFAYHKGMKFS TKDVDNDKKGSNCAQEYTGAWWYNACHNSNLNGKHGGSGNTNMRWWDWKDTKKDAFMKETIMMIKC |
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