Gene
| Gene Model ID | pfu_aug2.0_40.1_00115 |
|---|---|
| Locus | scaffold40.1 : 572440 ... 576442 : + |
| To GenomeBrowser | scaffold40.1:572440..576442 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_24894.1_33474 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00115.t1 | 1 | 1 | Fibrinogen_C | 48 | 255 | 0.0 | 206.5 | 0.0 | 0.0 | 206.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00115.t1 | gi|586466532|ref|XP_006863882.1| | PREDICTED: ficolin-1 [Chrysochloris asiatica] | 0.0 |
| pfu_aug2.0_40.1_00115.t1 | gi|529423108|ref|XP_005231401.1| | PREDICTED: LOW QUALITY PROTEIN: ficolin-1-like [Falco peregrinus] | 0.0 |
| pfu_aug2.0_40.1_00115.t1 | gi|511963295|ref|XP_004799801.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00115.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00115.t1 atgaagtcagcgacatggaaacgtattggttggaaggcagaggcggacggttctgtgacattatctctggttcaaaagtt taaggtaccactgaaaggaatatatcatggaaaaggtgatatcgatccttttgaacaagtacaatcatgcactgatataa aaaatagatataccgacgccacaagcaaagtgtacactatatatcctgatggaaagacgcccaaactcgcatattgtgac atggtgaccgaaggcggcggctggacggtctttcaaaggagaactgacggaagtgttgatttctacagaggatggagtga ttacaagattggatttggagacacatcaaaggaatattggcttggaaatgaagcaatacatacactaacagaagacggaa cctgtaccctgagaattgatatggtaactgtacagaatgagaaaggttttgccaaatttacaaattttacaatttcatct gaggacaaaaaatacaaaatggactacaacaaatactatggaacagctggtgaaacttctttctcgtaccacaagggtat gaagttctctacaaaagacgtggataatgatgaaaagggtagcaactgcgctcaggagtatacgggagcgtggtggtaca agaattgtcattactcaaacctcaatggaaaatacggcggatctggttctaagtacatgcgctggtgggattggaagaat actaaaaaagatgccttcatgaaggaaaccattatgatgataaaatgttag |
|
Protein
| Protein ID | pfu_aug2.0_40.1_00115.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00115.t1 MKSATWKRIGWKAEADGSVTLSLVQKFKVPLKGIYHGKGDIDPFEQVQSCTDIKNRYTDATSKVYTIYPDGKTPKLAYCD MVTEGGGWTVFQRRTDGSVDFYRGWSDYKIGFGDTSKEYWLGNEAIHTLTEDGTCTLRIDMVTVQNEKGFAKFTNFTISS EDKKYKMDYNKYYGTAGETSFSYHKGMKFSTKDVDNDEKGSNCAQEYTGAWWYKNCHYSNLNGKYGGSGSKYMRWWDWKN TKKDAFMKETIMMIKC |
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