Gene
| Gene Model ID | pfu_aug2.0_40.1_00117 |
|---|---|
| Locus | scaffold40.1 : 588097 ... 596199 : - |
| To GenomeBrowser | scaffold40.1:588097..596199 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_22911.1_69525 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00117.t1 | 3 | 1 | Myosin_tail_1 | 59 | 140 | 6.3e-17 | 60.6 | 1.0e-09 | 8.3e-07 | 27.1 |
| pfu_aug2.0_40.1_00117.t1 | 2 | 1 | Filament | 60 | 158 | 8.0e-09 | 35.3 | 0.00025 | 0.21 | 11.0 |
| pfu_aug2.0_40.1_00117.t1 | 3 | 2 | Myosin_tail_1 | 195 | 274 | 6.3e-17 | 60.6 | 0.00011 | 0.094 | 10.4 |
| pfu_aug2.0_40.1_00117.t1 | 2 | 2 | Filament | 205 | 463 | 8.0e-09 | 35.3 | 1.9e-09 | 1.6e-06 | 27.8 |
| pfu_aug2.0_40.1_00117.t1 | 3 | 3 | Myosin_tail_1 | 272 | 466 | 6.3e-17 | 60.6 | 7.4e-12 | 6.1e-09 | 34.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00117.t1 | gi|641785128|ref|XP_008174825.1| | PREDICTED: coiled-coil domain-containing protein 102A [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_40.1_00117.t1 | gi|564245202|ref|XP_006261726.1| | PREDICTED: coiled-coil domain-containing protein 102A [Alligator mississippiensis] | 0.0 |
| pfu_aug2.0_40.1_00117.t1 | gi|632987058|ref|XP_007910583.1| | PREDICTED: coiled-coil domain-containing protein 102A-like [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_40.1_00117.t1 | gi|556992058|ref|XP_006000485.1| | PREDICTED: coiled-coil domain-containing protein 102A-like isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_40.1_00117.t1 | gi|733906418|ref|XP_010716316.1| | PREDICTED: coiled-coil domain-containing protein 102A, partial [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00117.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00117.t1 atgagtcagaaaataaaatcctcccattctggtgggagtaaaggagatgtgtcgtgtattagagcaacggttacacccgt tcccatggcgccatccccagcattcagggacggaaatcatacccccgtacaacaaatggccaacatggatgctgagtggg atgggagggatgaactattacagagagagttggaagaggcccgagcaaggacgtcacaaatggaaaaaaccatgcgttgg tggtccgactgtacagccaactggcgggaaaaatggagcaaggtccgtaacgaacgtaataaggcaagagaggaaaatag acaattacgtgcaaaacttgaacagcttgtgaaagagtgcacagaaactaagaggaaaaatcaggaactgactgctgaga acacacgattaaaggatcacagtgagggggataggaaggatttaactcaggtttcaagtagtagcaatgctgaaggcaat atgaatgcagcaaattcacctaggcaatcacagaacaatactactagtgcaaataatacatatgatatagtaagttatga tacagatttgataagtagtgacagagacctagaaggtagagaggagattgaggacagcctggccgaggaaaaagcagcat tatatgaactaaaactggacgaggcccagaaaacactcatggcagaaagaggagataaaactacccttaccaaatccata gagaggttacaattagagctggcatcagtgaaatctaaatatgaagatattaaaaggtcgaagcaagatgttatcctgga gataaccaaagttaaggaagaccacaaagaggatatactgagactgaaaaaggatttggaagaagaaatgtgcaataaat ccaacgtggacaaaaaactcggggaagttcgaagagagctggagaaattgcagcgtgagaatgcagatgaatggggtaaa cgagagagactggagactgataaatttgccttagagagagaaaataaaaagttacgtagtcagatagaggatctagaaga acaactagataggaagaaacagcaaacatcggcactcctggactctgatgtcaggaccatgcagttagaactgtcagaga aaactaaggagctgaatgatttgcggcacagtcacactaaagtgaagaaagcactacaggacaaaattaccgatttagag cacacacgacggagggctgaccagtatgagatggaagtaaagaaactccgagggcgcgttgatgagcttaaaaaggagct tgccaatacagaagatgaggttgatacacaatcaaacatggtaaggaaggtacagagaaccaatgatgagttacaggaaa tggtagaaaacctacaggtccagcttaaccatacagaaagcagattaaagcgaagcagtcagtcagcgttgaacacgttg gtgacagggcgtagtaaaggatttgatttaggcgatccagatgatgacagtgatgacctagatgatgactga |
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Protein
| Protein ID | pfu_aug2.0_40.1_00117.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00117.t1 MSQKIKSSHSGGSKGDVSCIRATVTPVPMAPSPAFRDGNHTPVQQMANMDAEWDGRDELLQRELEEARARTSQMEKTMRW WSDCTANWREKWSKVRNERNKAREENRQLRAKLEQLVKECTETKRKNQELTAENTRLKDHSEGDRKDLTQVSSSSNAEGN MNAANSPRQSQNNTTSANNTYDIVSYDTDLISSDRDLEGREEIEDSLAEEKAALYELKLDEAQKTLMAERGDKTTLTKSI ERLQLELASVKSKYEDIKRSKQDVILEITKVKEDHKEDILRLKKDLEEEMCNKSNVDKKLGEVRRELEKLQRENADEWGK RERLETDKFALERENKKLRSQIEDLEEQLDRKKQQTSALLDSDVRTMQLELSEKTKELNDLRHSHTKVKKALQDKITDLE HTRRRADQYEMEVKKLRGRVDELKKELANTEDEVDTQSNMVRKVQRTNDELQEMVENLQVQLNHTESRLKRSSQSALNTL VTGRSKGFDLGDPDDDSDDLDDD |
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