Gene
| Gene Model ID | pfu_aug2.0_40.1_00119 |
|---|---|
| Locus | scaffold40.1 : 610956 ... 617459 : - |
| To GenomeBrowser | scaffold40.1:610956..617459 |
| Genes list of scaffold | scaffold40.1 |
| Synonym | pfu_aug1.0_268171.1_14336 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| nedd8 | GO:0000124 GO:0003713 GO:0004383 GO:0004672 GO:0005524 GO:0005643 GO:0006182 GO:0006368 GO:0006406 GO:0006468 GO:0015031 GO:0016578 GO:0035556 GO:0045893 GO:0070390 GO:0071819 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_40.1_00119.t1 | 1 | 1 | Rad60-SLD | 1 | 71 | 6.3e-18 | 64.2 | 2.3e-21 | 6.9e-18 | 64.1 |
| pfu_aug2.0_40.1_00119.t1 | 1 | 1 | ubiquitin | 6 | 74 | 1.0e-26 | 92.0 | 3.9e-30 | 1.2e-26 | 91.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_40.1_00119.t1 | gi|193664755|ref|XP_001945024.1| | PREDICTED: NEDD8 [Acyrthosiphon pisum] | 1.96182e-44 |
| pfu_aug2.0_40.1_00119.t1 | gi|242018298|ref|XP_002429615.1| | NEDD8 precursor, putative [Pediculus humanus corporis] | 1.96182e-44 |
| pfu_aug2.0_40.1_00119.t1 | gi|156541904|ref|XP_001599314.1| | PREDICTED: NEDD8 [Nasonia vitripennis] | 2.94273e-44 |
| pfu_aug2.0_40.1_00119.t1 | gi|391345397|ref|XP_003746973.1| | PREDICTED: NEDD8-like [Metaseiulus occidentalis] | 2.94273e-44 |
| pfu_aug2.0_40.1_00119.t1 | gi|642923325|ref|XP_008193701.1| | PREDICTED: NEDD8 [Tribolium castaneum] | 2.94273e-44 |
Transcript
| Transcript ID | pfu_aug2.0_40.1_00119.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00119.t1 atgttgattaaagtaaagacacttacaggaaaagagattgaaattgacattgaacccacagataaggttgagaggataaa agaacgtgtagaagagaaggagggaattccccctccacaacaaagacttattttcagcggaaaacaaatgaatgatgaaa agacggcgcaagattacaaagtgaccggaggatctgtacttcatcttgttttagctttacgaggaggaatatga |
|
Protein
| Protein ID | pfu_aug2.0_40.1_00119.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_40.1_00119.t1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPPQQRLIFSGKQMNDEKTAQDYKVTGGSVLHLVLALRGGI |
|