Gene
| Gene Model ID | pfu_aug2.0_400.1_00689 |
|---|---|
| Locus | scaffold400.1 : 3671 ... 18075 : - |
| To GenomeBrowser | scaffold400.1:3671..18075 |
| Genes list of scaffold | scaffold400.1 |
| Synonym | pfu_aug1.0_15669.1_03631 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_400.1_00689.t1 | 2 | 1 | SEA | 16 | 94 | 1.2e-24 | 86.0 | 2.4e-12 | 8.9e-09 | 34.9 |
| pfu_aug2.0_400.1_00689.t1 | 2 | 1 | DOMON | 145 | 207 | 2.3e-10 | 40.4 | 1.0e-13 | 3.8e-10 | 39.7 |
| pfu_aug2.0_400.1_00689.t1 | 2 | 2 | SEA | 252 | 340 | 1.2e-24 | 86.0 | 1.2e-16 | 4.6e-13 | 48.7 |
| pfu_aug2.0_400.1_00689.t1 | 2 | 2 | DOMON | 485 | 509 | 2.3e-10 | 40.4 | 0.9 | 3300.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_400.1_00689.t1 | gi|260792469|ref|XP_002591237.1| | hypothetical protein BRAFLDRAFT_76677 [Branchiostoma floridae] | 2.0e-08 |
| pfu_aug2.0_400.1_00689.t1 | gi|699252847|ref|XP_009860937.1| | PREDICTED: uncharacterized protein LOC100180169 [Ciona intestinalis] | 2.0e-07 |
| pfu_aug2.0_400.1_00689.t1 | gi|260820018|ref|XP_002605332.1| | hypothetical protein BRAFLDRAFT_74157 [Branchiostoma floridae] | 2.0e-07 |
| pfu_aug2.0_400.1_00689.t1 | gi|260802058|ref|XP_002595910.1| | hypothetical protein BRAFLDRAFT_98560 [Branchiostoma floridae] | 4.0e-07 |
| pfu_aug2.0_400.1_00689.t1 | gi|512853070|ref|XP_002938932.2| | PREDICTED: uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like [Xenopus (Silurana) tropicalis] | 6.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_400.1_00689.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_400.1_00689.t1 atgcttggtaagcagtatgccccgactcgtttggtggacataggtataaagatcctaggtcatccatggcacaggtttta tgaggatcccaccacgcccgagtttaggaatctacataaagacatggatgaaggacttacagaatatctaacagcaaatt tacaaggattcatcagagtcagaaatattacatttagctcagggagtatccgagtacattttggcattgtatttgagaat agccgtaatgcggttgtcatgtctataaataacttggtacagacagtcggtacgatacatggctatgacctggacaagga cgtagtggacatatccactgctgaaccatacacagagacagaccctgtgatgaccacacctgccccacccctgacgtgtg agggtacgtgggggaattgtaatacagaggattctaactgttacttagtacgctggtcgtacaatgatagtactgggctg atcacattcacagtacgggtgtacttagagaacaaccaatgggcagctctaggattctctaggaatactcaaatggctgc cactgatgttgtggtgggatatgttagaccagatggaaagggagtgctacaggacaggctgccactgatgttgtggtggg atatgttagaccagatggaaagggagtgctacaggacagctacagctgctacaggtgtatccaccatgagtaccacccct gcccctaccccagctcctaacgccacaacttacgtcatgagggcagggttcaccatcactggcgtcctgtttatccccga tcatagagataaaaacacagaagcttacaagaacctggaacgtgatatcgttaatgcgctgactgacatcctacaaggca tgatgggatttgataaagttgtaatttatggattccgctcagggagcatagtggtagattatggagttgtgtatagaacc gtggaccacactgcctcagagatggtcgtgcgtgatagacttgacaggatcaaacataacaacacattggcaggatttac actggaccctaatagctttactgtagaggctccgcaagaatacaaagaggaggttgttactgtacctccgatggaaaaag aagaacttcccacagcgttaatcatcatcatagccgtagctggagccgggcttctattagtccttatactcggcacgtgt aactgtgtacgaacgtccaggatgaagaaaaaaacaccgtcagaggtaccctgggaaaacggccgggatgacaggaagtt gatgtcgtacatgagtaacgggaatggtacggatagtaatggctttacagaaatccgcgccaataagatctcgtatgatg attggttgaaacaacaacaggatgacaggaagttgatgtcgtacatgagtaacgggaatggtacggatagtaatggcttt acagaaatccgcgccaataagatctcgtatgatgattggttgaaacaacaacaggtggattcctacacaaacccggccta cagcgacatgccgacacagaatacaaacagcctcacgttcaaagacgagagattgtag |
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Protein
| Protein ID | pfu_aug2.0_400.1_00689.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_400.1_00689.t1 MLGKQYAPTRLVDIGIKILGHPWHRFYEDPTTPEFRNLHKDMDEGLTEYLTANLQGFIRVRNITFSSGSIRVHFGIVFEN SRNAVVMSINNLVQTVGTIHGYDLDKDVVDISTAEPYTETDPVMTTPAPPLTCEGTWGNCNTEDSNCYLVRWSYNDSTGL ITFTVRVYLENNQWAALGFSRNTQMAATDVVVGYVRPDGKGVLQDRLPLMLWWDMLDQMERECYRTATAATGVSTMSTTP APTPAPNATTYVMRAGFTITGVLFIPDHRDKNTEAYKNLERDIVNALTDILQGMMGFDKVVIYGFRSGSIVVDYGVVYRT VDHTASEMVVRDRLDRIKHNNTLAGFTLDPNSFTVEAPQEYKEEVVTVPPMEKEELPTALIIIIAVAGAGLLLVLILGTC NCVRTSRMKKKTPSEVPWENGRDDRKLMSYMSNGNGTDSNGFTEIRANKISYDDWLKQQQDDRKLMSYMSNGNGTDSNGF TEIRANKISYDDWLKQQQVDSYTNPAYSDMPTQNTNSLTFKDERL |
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