Gene
| Gene Model ID | pfu_aug2.0_401.1_04104 |
|---|---|
| Locus | scaffold401.1 : 57736 ... 93870 : + |
| To GenomeBrowser | scaffold401.1:57736..93870 |
| Genes list of scaffold | scaffold401.1 |
| Synonym | pfu_aug1.0_2506.1_51706 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| and ph domain-containing protein 6 | GO:0016043 GO:0044424 GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_401.1_04104.t1 | 4 | 1 | PH | 315 | 355 | 5.9e-09 | 36.0 | 1.2 | 3400.0 | -1.8 |
| pfu_aug2.0_401.1_04104.t1 | 4 | 2 | PH | 775 | 818 | 5.9e-09 | 36.0 | 2.8 | 8300.0 | -3.0 |
| pfu_aug2.0_401.1_04104.t1 | 2 | 1 | RhoGEF | 832 | 861 | 3.8e-31 | 108.3 | 0.001 | 3.0 | 7.6 |
| pfu_aug2.0_401.1_04104.t1 | 2 | 2 | RhoGEF | 870 | 994 | 3.8e-31 | 108.3 | 1.2e-31 | 3.5e-28 | 98.6 |
| pfu_aug2.0_401.1_04104.t1 | 4 | 3 | PH | 1009 | 1025 | 5.9e-09 | 36.0 | 0.1 | 300.0 | 1.6 |
| pfu_aug2.0_401.1_04104.t1 | 1 | 1 | FYVE | 1056 | 1119 | 2.9e-20 | 71.9 | 3.0e-23 | 8.9e-20 | 70.3 |
| pfu_aug2.0_401.1_04104.t1 | 4 | 4 | PH | 1203 | 1295 | 5.9e-09 | 36.0 | 2.1e-12 | 6.2e-09 | 36.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_401.1_04104.t1 | gi|332220802|ref|XP_003259544.1| | 0.0 | |
| pfu_aug2.0_401.1_04104.t1 | gi|524878570|ref|XP_005095969.1| | PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_401.1_04104.t1 | gi|119617927|gb|EAW97521.1| | FYVE, RhoGEF and PH domain containing 6 [Homo sapiens] | 0.0 |
| pfu_aug2.0_401.1_04104.t1 | gi|7023688|dbj|BAA92052.1| | unnamed protein product [Homo sapiens] | 0.0 |
| pfu_aug2.0_401.1_04104.t1 | gi|634863013|ref|XP_007944340.1| | PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6 [Orycteropus afer afer] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_401.1_04104.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04104.t1 atgacattttttcaggtactgtccaaaccaaaacccaaggtaccattaaaacctcctgttgctaagaaaccaacatctcc acctagccaatcaggtacagatcgtccaggggaaccccctccagataagaggaagccacccccacctctacctcgcaccc ctcccaaaggctcaggaaaacctcctcctcccaagccacgaacaacgagactatccagagaaaacagcctgcaaaatgtg agctccgaaaagtgtgataatggtgaccaaactgtggaaactattggtaccaagtgtagaagtcttggtgagagtagtga aaatttatcagaaatagcacacactgaaaaatgtagcacaagtcaagcacaacctgaggacacttcacacctcgcacaaa atttaaaccaggatgcatcacaacctgtcaacaaccttaaccaaagggaacctttatcaagtactgtaaatcagcccagt gatatttctgctgtaaataaccttggtgcacaaaattctagctcttcccttcaacctacagagaaaaattcaccaaccca acccaaagtttctccaaaagtagcccctaaaccacgaggtccaaaacctacacaaaatggagtgaatcagttgaatgaaa atgtaaacaatgtacatgaacctgaatgtgccaaagaaaattctgaggttgtgaaacttcgtccaaagcctcaaaaaagg tcacctggaaaacctagacccttgccacgaaaacgctcctccctctgtaagcagagtgggcttgacgtagaggatggtca agtttcggaaataagtccaagtgaaacatcctctatggcaaattcggtagaatctatacccaatgttgtgaacgatagtt cagagtctttgcctgctgatggtgatttaggtaaaaatttaagtggtagtacagatactgccagtgtctcatcatgtgtc aggattgacaaaggaatgtcaccaggtgattctgttaacaatgcgtcttccagtagtcaaaacgtgcaagagccaaaatt ttgtgccaaggattctcagtcttttactcatgagcaaagtgggaaactttcgtccaatttgtgcaatacgaaggaaaatt cagagggttgtgatagagaaaagcagcaaatcagtaccatgacagagaataaaagtggaaatcgtcctcaaaacttaagt gccaaaacatctgttattcatgaaccaagcaattccaatgcagacccattgtgtgaaagtgtgagttcttataaccaaag gtttgtggcaagtgatgaacctccaattgttgaaacatcatcacttcttgatgagatggaaagaattattagtcgtagaa tgagtgaattgggatctcagttttctacagatacagctcttcatggtagtcagtctgagcgtagttcattagactttcca attccacctactcgtcacaagaaaaatcgtttaaggtcacagtcaacccaatttcttactagatcattagatgcttcaga ttttggtggttcaaacttatcaataaattctgattcaggaattataataccgcctgcagtcagtaaacgaatttgtcctc caaaaccaaaacgcaacaagcttgcaaatcgcagcgtctctgatgtaggctgcttgagatctcgacctttacaaagtaaa ggagagatagatgttgattttgtagatgaaagtagttctgtaaaaggaacaaaagaagtacctcctacagtgccaagacg tcaaaggagcattactgttgacttttgtgttccagccaatcaacatgctttattacgagaaattgcattggctgatcaca aaaaaggactgaccaatcaggaaagcagttcaagagaccaatctctagaaaggaggaaaccaagacctacaagaaaagct cctccaccgccgaaaaaagtaaataatgtgacgtctaatacaagtgataaaaaagacatacaaggaaaagtacgtgtaga aaaagaccaagttgtgccaaatataaatgaaagggtaataaatcctaataaaacagactatgatggaatcagttctgatg aacatgatcatgagtacctagaaataccggaatcttttatccatcaacatatgttgaattctagtgcatctcctgaagga tcatcagtgctcagtagcggagatcaaacactaccggtaccgccagaattaccgccaagaaattcaatgtctccacaaag ctctattgatacagcctctccacgattatcaggaatctcgccgctagcgtcagaagttagcagcagtacatcagatctgc ataataaacatgaccgtccattgagtagagtcagcaccaacagtgtactgagcagtaactcagaaaacgagtcaatgtgt cagtttgagaataatgagttgagtacatcagagtcagaggatgaggaccttgaagataaagtggcaagaaagaaggaaaa gaaggtgttttacattgctcgtgaaatctggtcctcggagaaagttttcgtcagtgtcctcaagttattatgtgaggatt ttcgaacccatattcatgagtcaaaggatcctaatggtaaaccagttctcctacaggatctagaagggaggatcaataac tgggataagtgtaagcagatagcagacatatttgtaaagaaaggggcatttctcaagctgtatacgtcatatattagaga cttctcagagaccaacgaaatcttcgatgaagcatgcaagagacaacctccttttcaaactgcagtcagaactttcgaga tgagtccagtttgtgccagtctgacaatgaaacattacatgttaaagcccatacagaggataccacagtaccagctactc ctacaagattatttgaagaatttacccagggagtccccagactataccgatactctagctgctctgaatatcgtaagaga agttgctgatcatgccaacgaaagtatgaaacaagggatacttttcttttcatgtatatatagaacaatcaaagaaagag atgaatgggtgatagctttacagagtgccataagtgaaaatgcacagagaaagaaaacatttgacacaagggtcgacaat cagtccatatataacatagactatgagcttggttctaaggcgccgatctggattcccgataccagagtcactatgtgtat gatttgtacgtgtgaattctccgtcacttggaggcgtcatcactgcagggcatgtggtcgtgttctgtgttctaactgct cagacaataaagctcccctggagtaccttagaaacaaaccagctcgtgtgtgtgacgagtgttattcacagctgaaagca gcaattttcatacaaaaacattttttttctttatggttgattattatagccatagaaggaaagaggcgttcctccagtct tacagacagtgtaactcatgatacggatggatcattgctcagccttggtaatttactagaaaggttccaacagatcagaa aaagtgccaggtttacaccaaagttcaacatccgcagacctgcaaggctgaaagaggtacatgcaaatgacactggttcg tcaatcagtggttacctgaagattctgaaaggaaagaaatggaagaaattctggtttgtcttaaaagacaaagttctcta cacttataaagctagtaatgacatggcagcagttgaaagtatgccggtagttggatatgtagtgggatcacttaatcagg tccatgaaggatgtaagccatcagttctgtttcaacttatccataagaatcgtccggccattatatttcaagctgaagat gaagaggctaataagagatggatagcttcaatggaggatgcatccaaagcctga |
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Protein
| Protein ID | pfu_aug2.0_401.1_04104.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04104.t1 MTFFQVLSKPKPKVPLKPPVAKKPTSPPSQSGTDRPGEPPPDKRKPPPPLPRTPPKGSGKPPPPKPRTTRLSRENSLQNV SSEKCDNGDQTVETIGTKCRSLGESSENLSEIAHTEKCSTSQAQPEDTSHLAQNLNQDASQPVNNLNQREPLSSTVNQPS DISAVNNLGAQNSSSSLQPTEKNSPTQPKVSPKVAPKPRGPKPTQNGVNQLNENVNNVHEPECAKENSEVVKLRPKPQKR SPGKPRPLPRKRSSLCKQSGLDVEDGQVSEISPSETSSMANSVESIPNVVNDSSESLPADGDLGKNLSGSTDTASVSSCV RIDKGMSPGDSVNNASSSSQNVQEPKFCAKDSQSFTHEQSGKLSSNLCNTKENSEGCDREKQQISTMTENKSGNRPQNLS AKTSVIHEPSNSNADPLCESVSSYNQRFVASDEPPIVETSSLLDEMERIISRRMSELGSQFSTDTALHGSQSERSSLDFP IPPTRHKKNRLRSQSTQFLTRSLDASDFGGSNLSINSDSGIIIPPAVSKRICPPKPKRNKLANRSVSDVGCLRSRPLQSK GEIDVDFVDESSSVKGTKEVPPTVPRRQRSITVDFCVPANQHALLREIALADHKKGLTNQESSSRDQSLERRKPRPTRKA PPPPKKVNNVTSNTSDKKDIQGKVRVEKDQVVPNINERVINPNKTDYDGISSDEHDHEYLEIPESFIHQHMLNSSASPEG SSVLSSGDQTLPVPPELPPRNSMSPQSSIDTASPRLSGISPLASEVSSSTSDLHNKHDRPLSRVSTNSVLSSNSENESMC QFENNELSTSESEDEDLEDKVARKKEKKVFYIAREIWSSEKVFVSVLKLLCEDFRTHIHESKDPNGKPVLLQDLEGRINN WDKCKQIADIFVKKGAFLKLYTSYIRDFSETNEIFDEACKRQPPFQTAVRTFEMSPVCASLTMKHYMLKPIQRIPQYQLL LQDYLKNLPRESPDYTDTLAALNIVREVADHANESMKQGILFFSCIYRTIKERDEWVIALQSAISENAQRKKTFDTRVDN QSIYNIDYELGSKAPIWIPDTRVTMCMICTCEFSVTWRRHHCRACGRVLCSNCSDNKAPLEYLRNKPARVCDECYSQLKA AIFIQKHFFSLWLIIIAIEGKRRSSSLTDSVTHDTDGSLLSLGNLLERFQQIRKSARFTPKFNIRRPARLKEVHANDTGS SISGYLKILKGKKWKKFWFVLKDKVLYTYKASNDMAAVESMPVVGYVVGSLNQVHEGCKPSVLFQLIHKNRPAIIFQAED EEANKRWIASMEDASKA |
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