Gene
| Gene Model ID | pfu_aug2.0_401.1_04108 |
|---|---|
| Locus | scaffold401.1 : 139766 ... 153670 : + |
| To GenomeBrowser | scaffold401.1:139766..153670 |
| Genes list of scaffold | scaffold401.1 |
| Synonym | pfu_aug1.0_11790.1_39228 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_401.1_04108.t1 | 4 | 1 | WW | 184 | 209 | 1.8e-20 | 72.4 | 2.5e-10 | 1.2e-06 | 28.2 |
| pfu_aug2.0_401.1_04108.t1 | 4 | 2 | WW | 308 | 333 | 1.8e-20 | 72.4 | 7.7e-10 | 3.8e-06 | 26.6 |
| pfu_aug2.0_401.1_04108.t1 | 4 | 3 | WW | 416 | 442 | 1.8e-20 | 72.4 | 1.6e-10 | 7.8e-07 | 28.8 |
| pfu_aug2.0_401.1_04108.t1 | 2 | 1 | FF | 524 | 570 | 2.5e-23 | 81.7 | 1.3e-14 | 6.6e-11 | 41.9 |
| pfu_aug2.0_401.1_04108.t1 | 4 | 4 | WW | 540 | 544 | 1.8e-20 | 72.4 | 1.5 | 7200.0 | -3.1 |
| pfu_aug2.0_401.1_04108.t1 | 2 | 2 | FF | 588 | 637 | 2.5e-23 | 81.7 | 2.4e-15 | 1.2e-11 | 44.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_401.1_04108.t1 | gi|524878051|ref|XP_005095718.1| | PREDICTED: transcription elongation regulator 1-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_401.1_04108.t1 | gi|676439482|ref|XP_009048867.1| | hypothetical protein LOTGIDRAFT_200762 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_401.1_04108.t1 | gi|632948423|ref|XP_007889591.1| | PREDICTED: transcription elongation regulator 1 isoform X5 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_401.1_04108.t1 | gi|632948421|ref|XP_007889590.1| | PREDICTED: transcription elongation regulator 1 isoform X4 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_401.1_04108.t1 | gi|642912473|ref|XP_008200877.1| | PREDICTED: transcription elongation regulator 1 isoform X3 [Tribolium castaneum] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_401.1_04108.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04108.t1 atggcggacgaaggggaagcgccggtgcagtcgtcagacactgcgcctcctggcgaaccacaagatagcggagatggttt caagggttatcgaggcggctttggtggccctccacctcgtggaagaggtttcatgcgcggacctcgaccaccaccttatg gaagaggtccaccaggtcctgggagattcagaggtccacctggccctggaatgagaggtccacctccagggatgagagga ccaccaggtatgagaggacatccaagaggtccacctccttatggtagaccaccgtttgacccaaattacggtccaccacc tggaatgggtcatggtccacctcctccagggatgggaccacctcaggggatgccaccaccaccaggaatgggaccaccac atcctggtatgggaccacctcctggtatgccacccccaccaggaatgcgtcccccaatgatgcctccccctgggatgcca cctcccaatttctcggtacctccccctggatttggtccccctcaggctggacaaggaaatgaagaactttgggttgaaac taaaaccggagaaggaaagacatactactacaatgctaggactcgtgaatcggcatggaccaaaccggagggagtaaaaa tcatcacccagcaggaagtggaagccatggctgctcagcaaactggcaatcctgtgccacaaaataccgggccatcaaca gccgctcaagccgcagtggctcaagctgcagtgacaaatcaaggaccagatcaatctgcaggtggtgtaccaggtggata tttacctccctttatgcagcaaaatcaagttcccaatgaggaaggtcaaggagaaaatggtgttacagcccataaactac ccactacacagctacctccaaagccccaggaggtgatggaatggtcagaacacaagagtgctgacggaagatcgtacttc tataactctgtcaaaatggaatcgacctgggataaacctcaagttcttgttgactgggaagccaaagtagcggccctatc tcagccccaggtacagcccagccctacccaggctgaggtgacgcagatgaacggacagtcaaccccagaggatgtttcca tggatacatcagagaaggaaccagaagaagaggtgaaaaaagaagagccagaacaaaagcaggaggaagagaaatctcag gcagataaatccagacctgtatctagtacacctgtacccggaacaccatggtgtgtggtatggactggagatggacgtgt gtttttcttcaatccaagtcagcgagtgtcactgtgggaaaagccggaggagctgattggtcgaaatgacgtggacaaga tgctacagagtccccctgacggtaacaagaaggagaaagaggcagaggagcaggaggagccctcagcaaagaaagccaag atggagacagctgtagattcggatgatggtcaaggtgagaagaagactatagatgtaggtaaggaagccgccatagaggc ggaggtacaagcagcgcggcaaagagccgttgttccactggagatcaggatgaagcagttcagagatatgttagcagaga aagaggtgtcggcgttctcaacatgggagaaggagctacataagattgtgtttgaccagcggtatctactactgacgtcc aaggagaggaagcaggtgtttgagcagtacgtgaaggagagagcggaggaggaacggagagaaaaacatcgcaagctcag ggagaagaaggactctttccggcagttactggaagaggcaaaactgcacggaaagtcgtccttcagcgaatttgcatcca aatatggaaaggatgaaaggtttaaaggtatagacaagatgagggagagagaagccattttcagtgacttctgctcggat ttacgtcgcaaggaaaaagaggagaaatccaatcagaaagaaaaaataccgtctcaaatgggaaataactctgtattctg caaagacacaatagaatggaagttcttcatgtatgaattttgtgaattgatctttaatgagtag |
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Protein
| Protein ID | pfu_aug2.0_401.1_04108.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04108.t1 MADEGEAPVQSSDTAPPGEPQDSGDGFKGYRGGFGGPPPRGRGFMRGPRPPPYGRGPPGPGRFRGPPGPGMRGPPPGMRG PPGMRGHPRGPPPYGRPPFDPNYGPPPGMGHGPPPPGMGPPQGMPPPPGMGPPHPGMGPPPGMPPPPGMRPPMMPPPGMP PPNFSVPPPGFGPPQAGQGNEELWVETKTGEGKTYYYNARTRESAWTKPEGVKIITQQEVEAMAAQQTGNPVPQNTGPST AAQAAVAQAAVTNQGPDQSAGGVPGGYLPPFMQQNQVPNEEGQGENGVTAHKLPTTQLPPKPQEVMEWSEHKSADGRSYF YNSVKMESTWDKPQVLVDWEAKVAALSQPQVQPSPTQAEVTQMNGQSTPEDVSMDTSEKEPEEEVKKEEPEQKQEEEKSQ ADKSRPVSSTPVPGTPWCVVWTGDGRVFFFNPSQRVSLWEKPEELIGRNDVDKMLQSPPDGNKKEKEAEEQEEPSAKKAK METAVDSDDGQGEKKTIDVGKEAAIEAEVQAARQRAVVPLEIRMKQFRDMLAEKEVSAFSTWEKELHKIVFDQRYLLLTS KERKQVFEQYVKERAEEERREKHRKLREKKDSFRQLLEEAKLHGKSSFSEFASKYGKDERFKGIDKMREREAIFSDFCSD LRRKEKEEKSNQKEKIPSQMGNNSVFCKDTIEWKFFMYEFCELIFNE |
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