Gene
| Gene Model ID | pfu_aug2.0_401.1_04109 |
|---|---|
| Locus | scaffold401.1 : 154926 ... 159401 : + |
| To GenomeBrowser | scaffold401.1:154926..159401 |
| Genes list of scaffold | scaffold401.1 |
| Synonym | pfu_aug1.0_41270.1_55812 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| transcription elongation regulator partial | GO:0000122 GO:0001103 GO:0001106 GO:0003700 GO:0005730 GO:0015629 GO:0016363 GO:0044822 GO:0070064 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_401.1_04109.t1 | 3 | 1 | FF | 61 | 112 | 4.1e-32 | 109.8 | 2.0e-11 | 5.0e-08 | 32.7 |
| pfu_aug2.0_401.1_04109.t1 | 3 | 2 | FF | 119 | 169 | 4.1e-32 | 109.8 | 4.0e-14 | 9.8e-11 | 41.4 |
| pfu_aug2.0_401.1_04109.t1 | 3 | 3 | FF | 178 | 234 | 4.1e-32 | 109.8 | 6.4e-16 | 1.6e-12 | 47.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_401.1_04109.t1 | gi|675628455|ref|XP_008942663.1| | PREDICTED: transcription elongation regulator 1, partial [Merops nubicus] | 0.0 |
| pfu_aug2.0_401.1_04109.t1 | gi|26349921|dbj|BAC38600.1| | unnamed protein product [Mus musculus] | 0.0 |
| pfu_aug2.0_401.1_04109.t1 | gi|564252105|ref|XP_006265088.1| | PREDICTED: transcription elongation regulator 1 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_401.1_04109.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04109.t1 atggacagagatgaatgtcttagcgtttatactccagattctgaggatgaggagaaaaaagagcgtgagaagcaagagag aatagaagcaagtatccgtaaacggacagaagaagtagaacgctcactatcaaactcgctaagagaacgagacaaggaaa gagagcaacataagagagatgaggccgtacagttgttcaacgctctcttagtggatctggtgaaaaactctgaagcttca tggagggacactcgtaaacaactcagaaaggaccatcggtgggacatggccgatcaacttgatcgtgaggagaaagaaaa attatttgaggaacatatagaaagcttgggcaaaaaaaacaaagaaatgttccacaaacttctggatgaaactgatatca gcctgactgcctcttggaaagaagtgaagaaacagattaaagaagatcctagatatatcaaattctcatctagtgacagg aaaagagagaaggaattcaacgattacatacatgagaaatatgtgaatggtaaagctgaattcagagaattgttgaagga gaccaaactcattacctacaaatccaagaaattacttgaggaatctgattcccatttgaaagacattgaaaaaatccttg agaaggataagcgatatctgctactggactgtgtgccagaggagagggctaaaatcctcctatcatacatcgaggattta catcgcaagggtgtccctccgccccctactgcgtcagaacccactcgcagaactaccaaatag |
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Protein
| Protein ID | pfu_aug2.0_401.1_04109.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04109.t1 MDRDECLSVYTPDSEDEEKKEREKQERIEASIRKRTEEVERSLSNSLRERDKEREQHKRDEAVQLFNALLVDLVKNSEAS WRDTRKQLRKDHRWDMADQLDREEKEKLFEEHIESLGKKNKEMFHKLLDETDISLTASWKEVKKQIKEDPRYIKFSSSDR KREKEFNDYIHEKYVNGKAEFRELLKETKLITYKSKKLLEESDSHLKDIEKILEKDKRYLLLDCVPEERAKILLSYIEDL HRKGVPPPPTASEPTRRTTK |
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