Gene
| Gene Model ID | pfu_aug2.0_401.1_04111 |
|---|---|
| Locus | scaffold401.1 : 167821 ... 180850 : - |
| To GenomeBrowser | scaffold401.1:167821..180850 |
| Genes list of scaffold | scaffold401.1 |
| Synonym | pfu_aug1.0_6282.1_38308 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_401.1_04111.t1 | 6 | 1 | Syntaxin-18_N | 8 | 14 | 1.9e-06 | 27.5 | 0.36 | 900.0 | -0.2 |
| pfu_aug2.0_401.1_04111.t1 | 6 | 2 | Syntaxin-18_N | 53 | 69 | 1.9e-06 | 27.5 | 1.8 | 4300.0 | -2.4 |
| pfu_aug2.0_401.1_04111.t1 | 6 | 3 | Syntaxin-18_N | 146 | 184 | 1.9e-06 | 27.5 | 7.8e-10 | 1.9e-06 | 27.5 |
| pfu_aug2.0_401.1_04111.t1 | 6 | 4 | Syntaxin-18_N | 190 | 204 | 1.9e-06 | 27.5 | 2.4 | 5800.0 | -2.8 |
| pfu_aug2.0_401.1_04111.t1 | 6 | 5 | Syntaxin-18_N | 223 | 239 | 1.9e-06 | 27.5 | 2.3 | 5700.0 | -2.8 |
| pfu_aug2.0_401.1_04111.t1 | 6 | 6 | Syntaxin-18_N | 318 | 369 | 1.9e-06 | 27.5 | 1.7 | 4200.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_401.1_04111.t1 | gi|676456086|ref|XP_009054214.1| | hypothetical protein LOTGIDRAFT_117319 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_401.1_04111.t1 | gi|632959250|ref|XP_007895508.1| | PREDICTED: syntaxin-18 isoform X1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_401.1_04111.t1 | gi|632959252|ref|XP_007895510.1| | PREDICTED: syntaxin-18 isoform X2 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_401.1_04111.t1 | gi|524891207|ref|XP_005102139.1| | PREDICTED: syntaxin-18-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_401.1_04111.t1 | gi|291241355|ref|XP_002740578.1| | PREDICTED: syntaxin-18-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_401.1_04111.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04111.t1 atggagacttcagccatgacagattcagaaagagatcagatagaggctgaagctgagaagattataaaacagtgcagaga gactattggatatataaggaatatggtagagacacaggttgttcaccctcaagtcaaagaacacagacatgcagtactta aactattggaggaatatctaaaagtcgtatgtaaaatttacaccgaacaaaaagctgtgcgagttaagcgagtggtggac aggaaaagaatatctaagttagaaacagaactgctctacaaacagagaaggatcaactctacagtgcagagtaaaaactc tacagtacagagtaaaagtaaagaaaaagacatgaatcagtccagcaaagtagaaaatgaccacacccattttccaagac ccttggggtctgattctcacacaaaacatcaggtagccagtatttcaaagctgaaagaatttttattaagtcacagaaaa gaatatgtaaatgcaggaagtctcttaagtatggagacctcagccatgacagattcagagagagatcagatagaagctga agctgagaagattataaaacagtgcagagaaactattggatatataaggaatatggtggagacacaggttgttcaccctc aagtcaaagaacacagacatgcagtacttaaactactggaggaatatctaaaagttgtatgtaaaatttacacagaacaa aaagctgttagagttaagcgagtggtggacaggaaaagaatatctaagttagaaacagaactgctctacaaacagagaag gatcaactctacagtgcagagtaaaaactctacagtacagagtaaaagtaaagaaaaagacatgaatcagtccagcaaag ttttaaagtcacaaccaaaaacaaccaatgaaggcccctcttcatcctcacagaaagccactgaatcacagaacagagtt gcattagaagaatctagtcaattttcagacgatgatatttctccagaagaagctcagatgtttgaaaaagaaaacgaggt gttgtttgaagaaatgaacagcctagtgtcagagattagtcaaattgaaggtaaagtcttggaagtggcaaagcttcaag aaattttcacagaaaaagttttagaacaggaaaaagatatagacaggatagagcaaactgttgtcggaactacggaaaac atcaaagacgcaaatgaagaaatcagagaggccatgaaaaacagtgccggattccgagtgtggattttattcttcctatt agtgtgtacgttatcgctgctatttttagactggtacaacggctga |
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Protein
| Protein ID | pfu_aug2.0_401.1_04111.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_401.1_04111.t1 METSAMTDSERDQIEAEAEKIIKQCRETIGYIRNMVETQVVHPQVKEHRHAVLKLLEEYLKVVCKIYTEQKAVRVKRVVD RKRISKLETELLYKQRRINSTVQSKNSTVQSKSKEKDMNQSSKVENDHTHFPRPLGSDSHTKHQVASISKLKEFLLSHRK EYVNAGSLLSMETSAMTDSERDQIEAEAEKIIKQCRETIGYIRNMVETQVVHPQVKEHRHAVLKLLEEYLKVVCKIYTEQ KAVRVKRVVDRKRISKLETELLYKQRRINSTVQSKNSTVQSKSKEKDMNQSSKVLKSQPKTTNEGPSSSSQKATESQNRV ALEESSQFSDDDISPEEAQMFEKENEVLFEEMNSLVSEISQIEGKVLEVAKLQEIFTEKVLEQEKDIDRIEQTVVGTTEN IKDANEEIREAMKNSAGFRVWILFFLLVCTLSLLFLDWYNG |
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