Gene
| Gene Model ID | pfu_aug2.0_402.1_07457 |
|---|---|
| Locus | scaffold402.1 : 41346 ... 63602 : + |
| To GenomeBrowser | scaffold402.1:41346..63602 |
| Genes list of scaffold | scaffold402.1 |
| Synonym | pfu_aug1.0_18943.1_47264 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerase iii subunit rpc2 | GO:0006351 GO:0016779 GO:0055123 GO:0097159 GO:1901363 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_402.1_07457.t1 | 2 | 1 | RNA_pol_Rpb2_1 | 2 | 316 | 0.0 | 157.8 | 0.0 | 5.60519e-45 | 152.6 |
| pfu_aug2.0_402.1_07457.t1 | 2 | 1 | RNA_pol_Rpb2_2 | 128 | 169 | 2.8e-11 | 43.1 | 0.058 | 120.0 | 1.9 |
| pfu_aug2.0_402.1_07457.t1 | 2 | 2 | RNA_pol_Rpb2_2 | 162 | 257 | 2.8e-11 | 43.1 | 8.9e-14 | 1.9e-10 | 40.4 |
| pfu_aug2.0_402.1_07457.t1 | 1 | 1 | RNA_pol_Rpb2_3 | 332 | 397 | 4.2e-22 | 77.6 | 4.1e-25 | 8.6e-22 | 76.6 |
| pfu_aug2.0_402.1_07457.t1 | 1 | 1 | RNA_pol_Rpb2_4 | 433 | 495 | 2.1e-23 | 81.8 | 2.9e-26 | 6.1e-23 | 80.4 |
| pfu_aug2.0_402.1_07457.t1 | 2 | 2 | RNA_pol_Rpb2_1 | 509 | 531 | 0.0 | 157.8 | 0.012 | 25.0 | 3.7 |
| pfu_aug2.0_402.1_07457.t1 | 1 | 1 | RNA_pol_Rpb2_5 | 515 | 543 | 5.4e-09 | 35.8 | 5.6e-12 | 1.2e-08 | 34.7 |
| pfu_aug2.0_402.1_07457.t1 | 4 | 1 | RNA_pol_Rpb2_6 | 556 | 646 | 0.0 | 410.5 | 2.4e-20 | 5.0e-17 | 61.7 |
| pfu_aug2.0_402.1_07457.t1 | 4 | 2 | RNA_pol_Rpb2_6 | 628 | 837 | 0.0 | 410.5 | 6.44597e-44 | 1.4e-40 | 139.2 |
| pfu_aug2.0_402.1_07457.t1 | 4 | 3 | RNA_pol_Rpb2_6 | 852 | 933 | 0.0 | 410.5 | 2.9e-23 | 6.1e-20 | 71.3 |
| pfu_aug2.0_402.1_07457.t1 | 4 | 4 | RNA_pol_Rpb2_6 | 933 | 1046 | 0.0 | 410.5 | 1.49939e-43 | 3.3e-40 | 138.0 |
| pfu_aug2.0_402.1_07457.t1 | 1 | 1 | RNA_pol_Rpb2_7 | 1048 | 1133 | 2.9e-32 | 110.7 | 3.1e-35 | 6.5e-32 | 109.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_402.1_07457.t1 | gi|488567429|ref|XP_004473364.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Dasypus novemcinctus] | 0.0 |
| pfu_aug2.0_402.1_07457.t1 | gi|597773745|ref|XP_007250603.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_402.1_07457.t1 | gi|557282875|ref|XP_006024329.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform X2 [Alligator sinensis] | 0.0 |
| pfu_aug2.0_402.1_07457.t1 | gi|700375794|ref|XP_009942318.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Opisthocomus hoazin] | 0.0 |
| pfu_aug2.0_402.1_07457.t1 | gi|564265772|ref|XP_006271715.1| | PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Alligator mississippiensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_402.1_07457.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07457.t1 atgaaagccaatgagaagatcctcagtgatgcagatccaaacttttacatgaagtacctgaatatctatgtgggtatgcc agacgtagaggaaggattcaacattaccaaacctatatcaccacatgagtgccgtcttcgtgatatgacatattcggccc caataacagtagacattgagtacactcgtggtaaccagagaatagttcgaaataatctccctataggcaggatgccaatt atgttgcggagttcaaactgtgttttaaacggcaaaagtcctgcagagatggccaagcttaacgaatgtcccatggatcc tggaggttacttcataacaaaagggtcagaaaaggtcatactcattcaggagcagctgtctaaaaatagaatgattgtag atacagaaagtggacgcaaaaatgtcattgaatgctcagtcaccagttctacccatgagaggaagagtaaaacctatgtc agcacaaagaaagagaagttctatctcagacataacactttctctgaggccctcaagtatataggaaacaaagttcgtcc tagaaggatgtggggaggcccaaagaaaacaaagattgaagaagccagagaggcattacatgacattgtactgtcacatg taccagtagtgcaatggaactttaaactaaaggctgcttatctagccctcatggtcagaagggtaattttggcccagggc aataaagtgcaggcagacgacagggattactatggtaacaaaagactggagctggctggacaacttctatcgctactttt tgaagatcttttcaagaaattcaactcagagttgaagagaattgctgacatgacgataccaaagccgagagccgcacagt ttgacatagtgaaacacatgagacaggatcagataactaatggacttgttaatgctatatctacaggaaactggtccatc aaaagatttaagatggacagagcaggtgtaacacaggtgttgtccagactgtcctatatatcagctctgggcatgatgac caggatctcctctcagtttgagaagacaaggaaagtcagtggtccccgttcacttcagccgtcacaatggggaatgctct gtccatctgatactcctgaaggagaggcatgtggtttggtaaagaatcttgccctaatgacccacataaccaccgacctt gatgaggcacctataatccgcctggcatttaacctcggtgtagaggacatccaattccttagtggagaagaaatgacaag tcctcaagtctatatggtctttctaaatggtaatatccttggtgttattagaaattatcagaagttggtgaaaacaatac gtctaatgaggagggcaggctatataaacgagtttgtgtctgtgtgtacaaatcactcacataaatgtgtatacatctct acagatggtggaagattatgtagaccatacatcattgtaaaggattgtcatccattggtagagagtagacatattgaaga actatcacagggattcaggagttttgatgatttcctgaaggaagggttggtagaataccttgatgtaaatgaggagaatg attgtatgatctccctgtatgagtcaggtattacaaagtactataggactgaantacagaccatagagctgattaacttt gacaagcttccggcaggccagaatgccacagtggctgtgatgagttacagtggatatgatatagaggatgctttagtgct taacaaggcctcacttgatagaggttttggtaggtgcttagtgtacagaaagcagggagtgaccatgaaacgttatgcca accaaagcttcgataaggttatgggaccattaatagacgcaacaactaacaagcctgtatggaaacactcggctctagac acagacggtatatgtgctgcagagttgattaactttgacaagctcccggcaggacagaatgccacagtggctgtgatgag ttatagtggatatgatatagaggatgctttagtgcttaacaaggcctcacttgatagaggttttggtaggtgcttagtgt acagaaagcagggagtgaccatgaaacgttatgccaaccaaagcttcgataaggttatgggaccattaattgacgcaaca actaacaagccggtatggaaacactcggctctagacacagacggtatatgtgctgcagctgagagaatagagaacagaca agtgctagtaaataagtggatgcccactgtcacagccacccagttacagtcagggatggctggtcaacctacacaacaac aaagtcaggattatagagaggtccctatcacatacaagggagcagaagcatcatacgtagagaaagttctcatctcctcc aatccagaagaggctttccttattaagatgttactgcggcagacgagacggccagagattggtgacaaattcagtagtcg tcatggacagaaagggtattcttcttcagttttgctcgtaccctgaatactgagatttgattttgttttcagagtatgtg gacttattgtaccacaagaagatatgccatttacagacttgataatgaatccccatggctacccgtcacgtatgacagta ggtaagctgatggagttactgggaagtaaagctggagtactggacggaaagtttcattatggcacagcatttggagggga caaagtagaagatttgtcggcagatttgattcgacatggctttaattaccttggcaaggattacgtcacttctggtataa tgaatccccatggctacccgtcacgtatgacagtaggtaagctgatggagttactgggaagtaaagctggagtactggac ggaaagtttcattatggcacagcatttggaggggacaaagtagaagatttgtcggcagatttgattcgacatggctttaa ttaccttggcaaggattacgtcacttctggtgtaacaggagaacctttagaagcctacatatactttggtcccatatact atcagaagctaaagcacatggtactggacaagatgcatgcccgtgccaaaggtcccagggccgtactaacacgtcagcct acggagggcagatcaagggacgggggtctgagactgggagaaatggagagagactgtctcataggttatggtgctagcat gttgttgttggagcggttgatgatatccagcgattccttcgaggttgatgtttgtggggaatgtggacttctcggatact cgggttggtgtcagtattgtaagtcatcgcgtcatgtatcaacgctcaagatgccatacgcctgtaagcttctgttccaa gaacttcagtctatgaacattgcaccgagactaactctcaaaccttacaaccaggcgacacatgcattccttgattttct ttccgtatga |
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Protein
| Protein ID | pfu_aug2.0_402.1_07457.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07457.t1 MKANEKILSDADPNFYMKYLNIYVGMPDVEEGFNITKPISPHECRLRDMTYSAPITVDIEYTRGNQRIVRNNLPIGRMPI MLRSSNCVLNGKSPAEMAKLNECPMDPGGYFITKGSEKVILIQEQLSKNRMIVDTESGRKNVIECSVTSSTHERKSKTYV STKKEKFYLRHNTFSEALKYIGNKVRPRRMWGGPKKTKIEEAREALHDIVLSHVPVVQWNFKLKAAYLALMVRRVILAQG NKVQADDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKRIADMTIPKPRAAQFDIVKHMRQDQITNGLVNAISTGNWSI KRFKMDRAGVTQVLSRLSYISALGMMTRISSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDL DEAPIIRLAFNLGVEDIQFLSGEEMTSPQVYMVFLNGNILGVIRNYQKLVKTIRLMRRAGYINEFVSVCTNHSHKCVYIS TDGGRLCRPYIIVKDCHPLVESRHIEELSQGFRSFDDFLKEGLVEYLDVNEENDCMISLYESGITKYYRTEXQTIELINF DKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYRKQGVTMKRYANQSFDKVMGPLIDATTNKPVWKHSALD TDGICAAELINFDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCLVYRKQGVTMKRYANQSFDKVMGPLIDAT TNKPVWKHSALDTDGICAAAERIENRQVLVNKWMPTVTATQLQSGMAGQPTQQQSQDYREVPITYKGAEASYVEKVLISS NPEEAFLIKMLLRQTRRPEIGDKFSSRHGQKGYSSSVLLVPXILRFDFVFRVCGLIVPQEDMPFTDLIMNPHGYPSRMTV GKLMELLGSKAGVLDGKFHYGTAFGGDKVEDLSADLIRHGFNYLGKDYVTSGIMNPHGYPSRMTVGKLMELLGSKAGVLD GKFHYGTAFGGDKVEDLSADLIRHGFNYLGKDYVTSGVTGEPLEAYIYFGPIYYQKLKHMVLDKMHARAKGPRAVLTRQP TEGRSRDGGLRLGEMERDCLIGYGASMLLLERLMISSDSFEVDVCGECGLLGYSGWCQYCKSSRHVSTLKMPYACKLLFQ ELQSMNIAPRLTLKPYNQATHAFLDFLSV |
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