Gene
| Gene Model ID | pfu_aug2.0_402.1_07462 |
|---|---|
| Locus | scaffold402.1 : 133906 ... 148526 : + |
| To GenomeBrowser | scaffold402.1:133906..148526 |
| Genes list of scaffold | scaffold402.1 |
| Synonym | pfu_aug1.0_87212.1_49377 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| eukaryotic translation initiation factor 2 subunit 3 | GO:0003924 GO:0005525 GO:0008152 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_402.1_07462.t1 | 1 | 1 | GTP_EFTU | 30 | 146 | 2.0e-27 | 95.8 | 8.2e-31 | 3.0e-27 | 95.2 |
| pfu_aug2.0_402.1_07462.t1 | 1 | 1 | GTP_EFTU_D2 | 160 | 227 | 9.2e-06 | 25.6 | 6.0e-09 | 2.2e-05 | 24.4 |
| pfu_aug2.0_402.1_07462.t1 | 1 | 1 | eIF2_C | 237 | 328 | 5.8e-38 | 128.8 | 3.09995e-41 | 1.2e-37 | 127.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_402.1_07462.t1 | gi|260789552|ref|XP_002589810.1| | hypothetical protein BRAFLDRAFT_125911 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_402.1_07462.t1 | gi|156377940|ref|XP_001630903.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_402.1_07462.t1 | gi|524908782|ref|XP_005109481.1| | PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_402.1_07462.t1 | gi|584026896|ref|XP_006808009.1| | PREDICTED: eukaryotic translation initiation factor 2 subunit 3-like [Neolamprologus brichardi] | 0.0 |
| pfu_aug2.0_402.1_07462.t1 | gi|556985666|ref|XP_005998518.1| | PREDICTED: eukaryotic translation initiation factor 2 subunit 3 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_402.1_07462.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07462.t1 atgaggactgaagtttcggtttactctttagcattttgtaaacccccntgtgacagagccggctgtaacggcagatttag agttctcagacatgtatcctttgttgattgtcctggtcacgacattcttatggccaccatgttgaacggagcagctgtta tggatgctgcattattattaatagctggaaatgaaacatgtccccagccacagacgtcagaacacttggctgctgtagag atcatgaagctcaaacacatacttatccttcaaaataaaatagatctggtcaaagagagtcaagcaaaggaacagtatga gcagatcttagcatttataaagggaacaattgcagaaggagcacctataatacctatatcagctcagcttaaatacaacg tagatgtcatttgtgaatatattgtaaaaaagatcccagtacctgtcagagatttcacatcagagccaaggttgattgga caagagatagaagtgagacctggtattgtatcaaaagattctgagggaaaactaacgataaaacccatcagatcgaggat tttgtcattgtttgccgagcagaacgatttacaatatgctgtacctggaggccttattggtgttggtacaaagatagacc ctatgctgtgtcgtgctgactggatggtagggcaggtgctgggagccgttaacgctctacctgatatttatacagagctg accatctcattcttcttgctcaggaggttactcggtgtcaaaacagagggggacaaaaaaggagcaaaggtccaaaaact gtccaaaaatgagattctgatggtcaatattggttctttatcgaccggtggacgtgttatagcagtcaaggctgatttgg ctaaaataggattaactaatcctgtatgtacagaaataggagagaaaatcgcacttagtaggcgtgtggagaaacattgg agattgattggatggggacaaattagacaaggaatcaaggtggagccagtcagccagaaaagttga |
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Protein
| Protein ID | pfu_aug2.0_402.1_07462.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07462.t1 MRTEVSVYSLAFCKPXCDRAGCNGRFRVLRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNETCPQPQTSEHLAAVE IMKLKHILILQNKIDLVKESQAKEQYEQILAFIKGTIAEGAPIIPISAQLKYNVDVICEYIVKKIPVPVRDFTSEPRLIG QEIEVRPGIVSKDSEGKLTIKPIRSRILSLFAEQNDLQYAVPGGLIGVGTKIDPMLCRADWMVGQVLGAVNALPDIYTEL TISFFLLRRLLGVKTEGDKKGAKVQKLSKNEILMVNIGSLSTGGRVIAVKADLAKIGLTNPVCTEIGEKIALSRRVEKHW RLIGWGQIRQGIKVEPVSQKS |
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