Gene
| Gene Model ID | pfu_aug2.0_402.1_07466 |
|---|---|
| Locus | scaffold402.1 : 199458 ... 219399 : - |
| To GenomeBrowser | scaffold402.1:199458..219399 |
| Genes list of scaffold | scaffold402.1 |
| Synonym | pfu_aug1.0_1964.1_08185 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| splicing factor 3a subunit 3-like | GO:0003676 GO:0005634 GO:0008270 GO:0060218 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_402.1_07466.t1 | 1 | 1 | SF3a60_bindingd | 46 | 73 | 9.9e-14 | 50.5 | 6.5e-17 | 2.4e-13 | 49.3 |
| pfu_aug2.0_402.1_07466.t1 | 2 | 1 | DUF3449 | 74 | 91 | 0.0 | 247.4 | 0.12 | 440.0 | 0.2 |
| pfu_aug2.0_402.1_07466.t1 | 1 | 1 | Telomere_Sde2_2 | 217 | 276 | 3.5e-29 | 99.8 | 2.0e-32 | 7.5e-29 | 98.7 |
| pfu_aug2.0_402.1_07466.t1 | 2 | 2 | DUF3449 | 297 | 474 | 0.0 | 247.4 | 0.0 | 0.0 | 245.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_402.1_07466.t1 | gi|676484949|ref|XP_009063503.1| | hypothetical protein LOTGIDRAFT_195680 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_402.1_07466.t1 | gi|675879339|ref|XP_009025223.1| | hypothetical protein HELRODRAFT_68394 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_402.1_07466.t1 | gi|148227146|ref|NP_001088491.1| | splicing factor 3a, subunit 3, 60kDa [Xenopus laevis] | 0.0 |
| pfu_aug2.0_402.1_07466.t1 | gi|62859201|ref|NP_001017118.1| | splicing factor 3A subunit 3 [Xenopus (Silurana) tropicalis] | 0.0 |
| pfu_aug2.0_402.1_07466.t1 | gi|499020610|ref|XP_004561086.1| | PREDICTED: splicing factor 3A subunit 3 [Maylandia zebra] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_402.1_07466.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07466.t1 atgatagcggtctaccatgctgtgagatacctaacgattgataactcccatgttatgctactaagatatatggaatgcac aacagagttaaaagacctgtatgaggacagagatggcctgcgtaaggaagaggtccaggctttgtcaggtcctaacgagt ttgcagaattctatgccaggctgaaacaacttagggagtttcatcgtaaacatcctaatgagataagtgttcctatgtca gttgaatttgatgagattacaaaaatgagagaaaattctggagaggagacacagaaccttgtggagtttacagatgaaga gggttatgggaaataccttgatctacatgaatgttatgtcaaatttataaacctcaaaggcatggagaaaatagactacc ttacgtatttgtctacatttgatcacctgtttgacataccgaaagacaggaaaaacgcagcatacaaagagtatctactt tatctcttggagtatttggaggactacacacacagagtcaaaccactgttagacatacaagaggaaatggaaaaagtaaa aggagactttgaatctcagtggacagaaggcacctttcctggctggcctaaagaagcaactggtgcgttaacacacacag gggcccatttagatctgtcagctttctcctcatgggaggagttggcctcccttggattagacagattgaaaagtgctttg atggctttgggtctcaagtgtggagggactttagaagaaagagccatgagattgttcagtacaaaggggaagaatctgga ggatttagacccggctatgtttgctaaatccaaacctggtagagccggaaagagcagagacgtagaaagacagaaggaga ttggtacattagagtcacaagtgtacaggttctcagaggtactgagtgagcagcgtgcggccacacgtgacaatgtgcag cgtaaacaagcacggacaggagacgagagagaggaatcagacgaggaggactttcatcagtcagattctgatgacgatga tgatgacatcccgtacaaccccaaaaacttacctctaggttgggatggaaagcctattccgtactggttatacaaactcc acggcctaaatatcagctactcgtgtgaaatctgtggtaatgctacgtacaaaggaccaaaagctttccagaggcatttt gcagagtggaggcacgccaatggaatgagatgtctcggcatcccaaacacggcacattttgcaaacgtaactctgataga agatgctctagcattatggtccaaaatcaaatccacaaaagaaacagatagatggaaacctgagacagaggaagaatttg aggacacgagtggtaatgtgttcaacaagaagacgtatgaagatctaaaaagacaaggactactgtga |
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Protein
| Protein ID | pfu_aug2.0_402.1_07466.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07466.t1 MIAVYHAVRYLTIDNSHVMLLRYMECTTELKDLYEDRDGLRKEEVQALSGPNEFAEFYARLKQLREFHRKHPNEISVPMS VEFDEITKMRENSGEETQNLVEFTDEEGYGKYLDLHECYVKFINLKGMEKIDYLTYLSTFDHLFDIPKDRKNAAYKEYLL YLLEYLEDYTHRVKPLLDIQEEMEKVKGDFESQWTEGTFPGWPKEATGALTHTGAHLDLSAFSSWEELASLGLDRLKSAL MALGLKCGGTLEERAMRLFSTKGKNLEDLDPAMFAKSKPGRAGKSRDVERQKEIGTLESQVYRFSEVLSEQRAATRDNVQ RKQARTGDEREESDEEDFHQSDSDDDDDDIPYNPKNLPLGWDGKPIPYWLYKLHGLNISYSCEICGNATYKGPKAFQRHF AEWRHANGMRCLGIPNTAHFANVTLIEDALALWSKIKSTKETDRWKPETEEEFEDTSGNVFNKKTYEDLKRQGLL |
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