Gene
| Gene Model ID | pfu_aug2.0_402.1_07468 |
|---|---|
| Locus | scaffold402.1 : 233670 ... 240223 : + |
| To GenomeBrowser | scaffold402.1:233670..240223 |
| Genes list of scaffold | scaffold402.1 |
| Synonym | pfu_aug1.0_20751.1_69360 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_402.1_07468.t1 | 4 | 1 | OTU | 39 | 122 | 8.9e-10 | 39.2 | 0.00022 | 3.3 | 8.3 |
| pfu_aug2.0_402.1_07468.t1 | 4 | 2 | OTU | 250 | 312 | 8.9e-10 | 39.2 | 0.00032 | 4.8 | 7.8 |
| pfu_aug2.0_402.1_07468.t1 | 4 | 3 | OTU | 398 | 458 | 8.9e-10 | 39.2 | 0.0018 | 27.0 | 5.3 |
| pfu_aug2.0_402.1_07468.t1 | 4 | 4 | OTU | 610 | 711 | 8.9e-10 | 39.2 | 1.8e-05 | 0.26 | 11.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_402.1_07468.t1 | gi|557011380|ref|XP_006006285.1| | PREDICTED: apolipoprotein L3-like, partial [Latimeria chalumnae] | 2.0e-08 |
| pfu_aug2.0_402.1_07468.t1 | gi|542206710|ref|XP_005476767.1| | PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Oreochromis niloticus] | 1.0e-06 |
| pfu_aug2.0_402.1_07468.t1 | gi|548353594|ref|XP_005729047.1| | PREDICTED: uncharacterized protein LOC102193932 isoform X2 [Pundamilia nyererei] | 2.0e-06 |
| pfu_aug2.0_402.1_07468.t1 | gi|554827977|ref|XP_005924592.1| | PREDICTED: stress response protein NST1-like isoform X3 [Haplochromis burtoni] | 2.0e-06 |
| pfu_aug2.0_402.1_07468.t1 | gi|554827975|ref|XP_005924591.1| | PREDICTED: stress response protein NST1-like isoform X2 [Haplochromis burtoni] | 2.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_402.1_07468.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07468.t1 atgttcagcaaactagaaatagcgtgtagaatattacgaagaagcggatatgacataaaaacgtaccagaatgaccggaa tgagttcttccagatcgtcggcgaggattttcccggtaaatcaaaatcagcttcgtccatgcggaaagagatatgtgagt ttgaagagaaacatcgccaatactttcagctgtttttggcaagaaatctcattaggcccttaacgcaatcggaaccgtcg gagaacttccgcgatgaccttaatatcacaagaaggaagggcactgctcccactccccgggaggtctttgctgctgcaga gttactccagcgcagtatatacattttcgagttttccgggaccacggaccgtgatatcgacgccatgacaggggtggttt atgctcctgtcattcggtttgagcttcctacagccgctaacaagatgaccatgctaattatggcgttagatgacaggaat cagatgatcccatactttgccagaataattcctagaaatgacggcgataccataatcccgtatccggcaccagtgtataa tgccgaccacaagaactgtattcaggccaggtttcgcaacacctttcttgatatgcatacgttctattccatgggacagg aagctgacaagaaagatttctttcgtagacttagtattgaggtctatggtacagaccagtacagcaacatggtgaaaaag ctcatctgtgatttagaaatggaagacgataaccttgacgtattcacaaaattcatagagggccaccaagaagattcatc tttggacgaaagaaagagagaaatgagagagcacgtggagaagctacgcgcaggaactaagatgcttggagacggcgaac tctttgcagcagctagcatcttcaacgtttctatatttgttgacaaggcaaagagaccctgttgtccgccacagacaaga catggttgtcatcgtcacctgaaacacattggcggttccaaaatagagtacgaagaaagaaacgaataccacagtcctgg gaacgatgtacagcttgttctgcaccgactccaggccgaggaacggactctggaccaagtgacaggaactttgtatgagg cttttgcgagagaagtgtttggagatgaaagttttgaccatagacagttacgcgatatactctcaaggagtggagataac cttgaacacaaaatccatgctgcgacagactggctgggagttcccgtgtacatttatagatctgtccagtcgcagtccca gaggttcctgtggaagtgttaccaaccatcggacgacagcacgcaacgtcaaaacgaggcatgtcggtattacgtcactc tgttttttgaaggaaacaacttcgatcgaattgttcccagagagggttgtaactgccagttattgcctcctatctccatt ctcagaagtgaacaagatccgagattcaatgcctcccttgtagccatttccaaaggagaaagacattcgcctttagtaac attcctaacagaggacccggctgattctctatttgaagtagaagagagagaattcccttcctgtgctccatattcagaaa tacgaggaattctcaaacgacctgacatgaggcagagaacaatagacgccnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnaccatggatcattctttctccctcttcagatgtg tcagtaaagaaatatttggtacagaggaaaactttgactttatcctgaaggaagtttgtaaagaaataatggaaaacgtg ggaacgtaccatgttcttctgaatccggacaccatgcaacagcaaagccaattttccgacttcttcaaaagtgctgaaac tattcaacagtcaagaaacagggagatggtaaaacagcttgtccttgacattgagaatggtattgctcctggtgaccccc aattgttggctttggcaacacatttccagaccactgtctatgtactgtctgtggactacgatgaagacctcgattcaaga ccaagtagtgtgtggaccgaatacacccagctgagaaacaaacgtaaacctccgggtttagcccagaggcgacacaggag taaatgcccaccagggaagttctacattgctttgtttaggtccgcggcaggtcagtatcacagaatagtccccgatactg acgtctgtaattgctgcttgattccacctaccatccctggtcgctacagagaaaaacttgatgagctccctgtaaacgaa agagtagtgtttgtgtctgcaagaaaggtggaaaatgccctggcaatggtaagagtggcgatagacgagtggttacggtg taacaggagtatgcagagcctatgtgatgccattataatagaattagaaagtaggagaaggaatgtaagcatagccactc tactagggtcaggcgcaggtgtagggggtgccttggttgctgtgggagccttactgttgccggcgaccggtggtgcatcc acggctctggtggttatagggggcctcgttggcgggctgggtggtctaggtgccgcaggggcaggcatcactgagtttgt aatgaataagggaacaatcgagagattggagaggtatcaaacattgatgagaactagatccgatcgtttacaagagggac tcgctgatctgcttcttgctcttcaaaatttggaccagacgataagtgcatttcatgtaaatcagaatttagaagccttt gacatgggagccttgagggccatacctaatgtcctccgtgcaataaaggggtttgcaatgattccactgggtgttctgag agtatccattcgcgggttgaccattgcggccgccatcttgggtcccttggcggcagtgatagatgctggttttgttcttt ggtcaatttacagtttgagtataggatctaaaactgatgtctcggaaaacattcggcggatatcggcaatgttacggtct tctcgggtacagatgcacgcgtgggcatacggcaatcacatcccgttgatgtacagatga |
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Protein
| Protein ID | pfu_aug2.0_402.1_07468.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07468.t1 MFSKLEIACRILRRSGYDIKTYQNDRNEFFQIVGEDFPGKSKSASSMRKEICEFEEKHRQYFQLFLARNLIRPLTQSEPS ENFRDDLNITRRKGTAPTPREVFAAAELLQRSIYIFEFSGTTDRDIDAMTGVVYAPVIRFELPTAANKMTMLIMALDDRN QMIPYFARIIPRNDGDTIIPYPAPVYNADHKNCIQARFRNTFLDMHTFYSMGQEADKKDFFRRLSIEVYGTDQYSNMVKK LICDLEMEDDNLDVFTKFIEGHQEDSSLDERKREMREHVEKLRAGTKMLGDGELFAAASIFNVSIFVDKAKRPCCPPQTR HGCHRHLKHIGGSKIEYEERNEYHSPGNDVQLVLHRLQAEERTLDQVTGTLYEAFAREVFGDESFDHRQLRDILSRSGDN LEHKIHAATDWLGVPVYIYRSVQSQSQRFLWKCYQPSDDSTQRQNEACRYYVTLFFEGNNFDRIVPREGCNCQLLPPISI LRSEQDPRFNASLVAISKGERHSPLVTFLTEDPADSLFEVEEREFPSCAPYSEIRGILKRPDMRQRTIDAXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMDHSFSLFRCVSKEIFGTEENFDFILKEVCKEIMENV GTYHVLLNPDTMQQQSQFSDFFKSAETIQQSRNREMVKQLVLDIENGIAPGDPQLLALATHFQTTVYVLSVDYDEDLDSR PSSVWTEYTQLRNKRKPPGLAQRRHRSKCPPGKFYIALFRSAAGQYHRIVPDTDVCNCCLIPPTIPGRYREKLDELPVNE RVVFVSARKVENALAMVRVAIDEWLRCNRSMQSLCDAIIIELESRRRNVSIATLLGSGAGVGGALVAVGALLLPATGGAS TALVVIGGLVGGLGGLGAAGAGITEFVMNKGTIERLERYQTLMRTRSDRLQEGLADLLLALQNLDQTISAFHVNQNLEAF DMGALRAIPNVLRAIKGFAMIPLGVLRVSIRGLTIAAAILGPLAAVIDAGFVLWSIYSLSIGSKTDVSENIRRISAMLRS SRVQMHAWAYGNHIPLMYR |
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