Gene
| Gene Model ID | pfu_aug2.0_402.1_07472 |
|---|---|
| Locus | scaffold402.1 : 298180 ... 312064 : + |
| To GenomeBrowser | scaffold402.1:298180..312064 |
| Genes list of scaffold | scaffold402.1 |
| Synonym | pfu_aug1.0_3987.1_37763 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_402.1_07472.t1 | 3 | 1 | PAT1 | 10 | 302 | 1.1e-36 | 126.4 | 6.8e-13 | 2.5e-09 | 35.9 |
| pfu_aug2.0_402.1_07472.t1 | 3 | 2 | PAT1 | 322 | 551 | 1.1e-36 | 126.4 | 7.6e-23 | 2.8e-19 | 68.9 |
| pfu_aug2.0_402.1_07472.t1 | 3 | 3 | PAT1 | 570 | 645 | 1.1e-36 | 126.4 | 3.3e-10 | 1.2e-06 | 27.0 |
| pfu_aug2.0_402.1_07472.t1 | 2 | 1 | Phage_integrase | 739 | 792 | 2.3e-06 | 27.4 | 1.4 | 5400.0 | -3.2 |
| pfu_aug2.0_402.1_07472.t1 | 2 | 2 | Phage_integrase | 887 | 1054 | 2.3e-06 | 27.4 | 1.5e-09 | 5.6e-06 | 26.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_402.1_07472.t1 | gi|676488041|ref|XP_009064488.1| | hypothetical protein LOTGIDRAFT_168358 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_402.1_07472.t1 | gi|390340432|ref|XP_003725242.1| | 0.0 | |
| pfu_aug2.0_402.1_07472.t1 | gi|524910674|ref|XP_005110212.1| | PREDICTED: protein PAT1 homolog 1-like [Aplysia californica] | 9.94922e-44 |
| pfu_aug2.0_402.1_07472.t1 | gi|688571243|ref|XP_009302985.1| | PREDICTED: uncharacterized protein LOC103911649 [Danio rerio] | 5.0e-38 |
| pfu_aug2.0_402.1_07472.t1 | gi|688606425|ref|XP_009293885.1| | PREDICTED: uncharacterized protein LOC103909477 [Danio rerio] | 3.0e-37 |
Transcript
| Transcript ID | pfu_aug2.0_402.1_07472.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07472.t1 atggatagcgaattgatggaagctcctgaggaggaagacgacattgacttgatgaatgatgaaacgtttggagaaaatat tgatggagattttgactgggaagatcaacatgagaagttgtcagaggttatgacaggtcatgattctggattcttccata gtgactaccagacccaggaggattttatggaacagaacatcagtcatatagtggatgatgagatagatgatccagccata gtaaatgccagtaggagtcgcgatataccaaggaaaactcagaatttggatgacatctttggtccatcctcaccaccggc cttactggacacagagcatctggtgtcaccttccagtaagaacatatggggttcacccattaaggattcccatctctcac agccccctgttaacaacctacagactctgtttgactttgccaaagctgcctccagctctcctcatccacagatgccatca gggggaagaaatataccgtctccagtagtcaaagggaaaactctagaggagctcgaagaacaattacttccaaagcaaaa aggaacatctggaccaatcacagcagaggaattagaacgtcaaatgagaggtgaagatcaaagagtaccccagatggccc ccagagatccaaggttttcccatccccctcctggttacttcccaccccctggatcccctgcagcaagatacctacagcaa gcttctcaagcccagagagtacctcctgggcgcagtccgtaccagcctcctgttatatctgatgggcggcggtcccccct ggcttacgtccctggatcaactccccctggacctgtccccccttacctcttggatggtaggagatcgcctgtgggtgtga ttccaggaactacccctccctcacataacagaagctcccccatcatgatgatacatgggcagtcaccattagcaggagga atgccccacccaggtaggaccacaccctctcctccccctgtgatgttatctggttcaccgatgggtgtgcccccagctcg ccttatgtctccttacgccaacagagccatgatccatgctatgggtaacagaatgccaacacctcctatgggaattccca ggcctatgggtcagaggcctcctaaccacagcccatatagccaccctcccccaccccatggtccatatgatggaccccct cctggaccacatcatcagagcccacacagtcatggcagtccatatggacatcatatgaatggccttcatagaccgcctca tccgaatgatccccggtacaacagaggtcgaggagggcgtggtagaatgatgggtggcaatagaggtctccatcataacg gtgagagtcgagactaccgaccccctggggagcatcagcatcgaccctacccaggagatcaccagcaccgcccatacaga cgctattataggtttaatgaggaggaggacagaaaacgatcaattgatggctatgccggactgatgactcagaaagaaaa agactggatcgtcaaaatccagctgattcagctccagtcagataatccttatttggatgattactattacactactttca cactgaagaaaaaggccgaggaaaggaagcgtcgtcaagagaatggtatatttgatgaaaaagactccgagttgaacctt atcatcccagcaatggccaagttagaaacaaggccatacaaaccagctcagtttgagggatccctgggtcgtctcaccac atctagtgttcacaatccccggcagattatagatgtaggatctgatataccccacacagacgatgctgagccgcagtgtg tcagcaaagaattacggaggtcacgacagctcctcatggaaatagaaaagataggagaagaggtcaatcctctacgtacc agaggtcgtacgataatgccaagtcaaggacagacaataaaggcaaggaaaggaaatcttttacaagtagttcctttcga attccaaagaaaaaatgacttaaaggtaggaaatctgttagcaaaatcaaatatacctgtagggggtgattctaatagca ccacattggccaagacgtcattggtatacaaggattctagaacttctgatagattgtccaatcaaacttccagtaacatc gagtttattacaccagccaaaatcaatgataaatcatccaaatccacagattttcaatctgacagcttggcttctctcaa caaacaatttgaaaagagaggcttttctaaacaaacaagagacttactatgtgcctcctggcgagaaggcacacagaaag attacatttcaaaattcaaaagatacagtagttggtgtagttcaaaacaaattgatccctatacggcaaatttaactcaa gttgccgaatttttgacatccttgtatactagtggcttgcaatataggactatagcaggataccgttctatgctatcttc tattattgattctgttgatggaagaccagtgggtcaacatccatatgttgttagacttttgaagggaatttttaattcaa ggccctcggtatcaaagctgctaccagagtggaatttgcctagggtcttgaaaatgctagagaaattgccttttgaacct ataaaaaaggcaaaattaaaacatgttaccatgaaaactgtttttctgatagccataactactttcagaagatgcagtga cttacaatcattgcgcattggagatggatcagtgtctgtacagaagaagggagttacttttattcgtcatggactcgcta aacaagatcgtccctctcactttggcactaaggtatttgttctatcttttacagagaacaaactactagatccaaaacgt gcattattttattacttaaaatgtactgaaagcttcagacatgatacagagggaaaagatgaaacaaaattgtttttatc aataaatgagccacataatcctgtttcatctcagactatttctagctggttagtgaaaactatcaagatgtcacatgata aggattgttcaggagtgaaaggtcactctacacgatccgttggaacctcgtgggccctcttcaatggtgcatccatgaag aatattcttgaagctgcagattggagcaaggagtctaccttcatacgttttacctga |
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Protein
| Protein ID | pfu_aug2.0_402.1_07472.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_402.1_07472.t1 MDSELMEAPEEEDDIDLMNDETFGENIDGDFDWEDQHEKLSEVMTGHDSGFFHSDYQTQEDFMEQNISHIVDDEIDDPAI VNASRSRDIPRKTQNLDDIFGPSSPPALLDTEHLVSPSSKNIWGSPIKDSHLSQPPVNNLQTLFDFAKAASSSPHPQMPS GGRNIPSPVVKGKTLEELEEQLLPKQKGTSGPITAEELERQMRGEDQRVPQMAPRDPRFSHPPPGYFPPPGSPAARYLQQ ASQAQRVPPGRSPYQPPVISDGRRSPLAYVPGSTPPGPVPPYLLDGRRSPVGVIPGTTPPSHNRSSPIMMIHGQSPLAGG MPHPGRTTPSPPPVMLSGSPMGVPPARLMSPYANRAMIHAMGNRMPTPPMGIPRPMGQRPPNHSPYSHPPPPHGPYDGPP PGPHHQSPHSHGSPYGHHMNGLHRPPHPNDPRYNRGRGGRGRMMGGNRGLHHNGESRDYRPPGEHQHRPYPGDHQHRPYR RYYRFNEEEDRKRSIDGYAGLMTQKEKDWIVKIQLIQLQSDNPYLDDYYYTTFTLKKKAEERKRRQENGIFDEKDSELNL IIPAMAKLETRPYKPAQFEGSLGRLTTSSVHNPRQIIDVGSDIPHTDDAEPQCVSKELRRSRQLLMEIEKIGEEVNPLRT RGRTIMPSQGQTIKARKGNLLQVVPFEFQRKNDLKVGNLLAKSNIPVGGDSNSTTLAKTSLVYKDSRTSDRLSNQTSSNI EFITPAKINDKSSKSTDFQSDSLASLNKQFEKRGFSKQTRDLLCASWREGTQKDYISKFKRYSSWCSSKQIDPYTANLTQ VAEFLTSLYTSGLQYRTIAGYRSMLSSIIDSVDGRPVGQHPYVVRLLKGIFNSRPSVSKLLPEWNLPRVLKMLEKLPFEP IKKAKLKHVTMKTVFLIAITTFRRCSDLQSLRIGDGSVSVQKKGVTFIRHGLAKQDRPSHFGTKVFVLSFTENKLLDPKR ALFYYLKCTESFRHDTEGKDETKLFLSINEPHNPVSSQTISSWLVKTIKMSHDKDCSGVKGHSTRSVGTSWALFNGASMK NILEAADWSKESTFIRFT |
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