Gene
| Gene Model ID | pfu_aug2.0_405.1_17393 |
|---|---|
| Locus | scaffold405.1 : 50336 ... 69595 : + |
| To GenomeBrowser | scaffold405.1:50336..69595 |
| Genes list of scaffold | scaffold405.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_405.1_17393.t1 | 2 | 1 | RNA_pol_I_A49 | 79 | 131 | 0.0 | 176.4 | 1.2e-10 | 1.7e-06 | 26.8 |
| pfu_aug2.0_405.1_17393.t1 | 2 | 2 | RNA_pol_I_A49 | 136 | 359 | 0.0 | 176.4 | 0.0 | 9.94922e-44 | 149.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_405.1_17393.t1 | gi|260828464|ref|XP_002609183.1| | hypothetical protein BRAFLDRAFT_125950 [Branchiostoma floridae] | 5.04467e-44 |
| pfu_aug2.0_405.1_17393.t1 | gi|524888426|ref|XP_005100784.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA49-like [Aplysia californica] | 1.99993e-41 |
| pfu_aug2.0_405.1_17393.t1 | gi|90076400|dbj|BAE87880.1| | unnamed protein product [Macaca fascicularis] | 3.0e-38 |
| pfu_aug2.0_405.1_17393.t1 | gi|544493396|ref|XP_005581330.1| | PREDICTED: DNA-directed RNA polymerase I subunit RPA49 isoform X2 [Macaca fascicularis] | 2.0e-37 |
| pfu_aug2.0_405.1_17393.t1 | gi|676434120|ref|XP_009047123.1| | hypothetical protein LOTGIDRAFT_203458 [Lottia gigantea] | 5.0e-37 |
Transcript
| Transcript ID | pfu_aug2.0_405.1_17393.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_405.1_17393.t1 atggcagattctgatctttataaagttgactgtaatagaactagacaaactgtcttgttagctaattttacaaatggaag tgtagtaccatcaaaggcagatcacttgaagattggctgctttaagaaagaagaaactgatccaaataaacagaaacgtt gcagagacagacaaactgagttatgtaggacagacatttggacagtatgtttgtcaggcggacacatcctcaaagttgca gagacagacaaactgagttatgtaggacagacatttggacagtatgtttgtcaggcggacacatcctcaaagaactatgt gggtattctagataaaacaacaggaaagatgaaaatctgtgatacattcatgttcaaaatgcatccaaaatctccagcca ccgaggacagtcaaggtgatataatacccccgtatgacaaggatgccactagacctgaggatgtctacaaactacatgat atcataagtgatgtggagatggatgcattgacaaacaacgccaaagaattctacgactctaactcagctaagattaggga gtggaaaactgaattcaaatatccatcatttgtattgaatcacctttcaaccctaccccatggagaggagagtcgatgga agagggcgaaatgtctgatgtacttaaactatatgatacacctgttcaatatgaaggcacatgactttaaaaagaaaaat ccattcccagatgcttggccaaaaccagtaatgactcgcctgagggacacttttactttactagtacaaactaaggttgg aaaaggagcctgtaggtgtatgccagccagattgaaagataaattggtgtcatacatcctggtacttgccctaattctgg atgaatgtatggtagaaatatcagatttacaaaccgacctcaaaattggacctcaaagattgatgacccattttaaggcg ttaggatgtattgtgaaggtacagaaggaaacactaagtaacggtgaagcattgatatgtaaagtagcagttctcaaagt tcctctcactttcccacaaataacaacaaagacaaaaaaggaaaggagattttctgttattttgaaaaagaaaaccaaat tttga |
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Protein
| Protein ID | pfu_aug2.0_405.1_17393.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_405.1_17393.t1 MADSDLYKVDCNRTRQTVLLANFTNGSVVPSKADHLKIGCFKKEETDPNKQKRCRDRQTELCRTDIWTVCLSGGHILKVA ETDKLSYVGQTFGQYVCQADTSSKNYVGILDKTTGKMKICDTFMFKMHPKSPATEDSQGDIIPPYDKDATRPEDVYKLHD IISDVEMDALTNNAKEFYDSNSAKIREWKTEFKYPSFVLNHLSTLPHGEESRWKRAKCLMYLNYMIHLFNMKAHDFKKKN PFPDAWPKPVMTRLRDTFTLLVQTKVGKGACRCMPARLKDKLVSYILVLALILDECMVEISDLQTDLKIGPQRLMTHFKA LGCIVKVQKETLSNGEALICKVAVLKVPLTFPQITTKTKKERRFSVILKKKTKF |
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