Gene
| Gene Model ID | pfu_aug2.0_408.1_27350 |
|---|---|
| Locus | scaffold408.1 : 3551 ... 19035 : - |
| To GenomeBrowser | scaffold408.1:3551..19035 |
| Genes list of scaffold | scaffold408.1 |
| Synonym | pfu_aug1.0_63.1_14765 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_408.1_27350.t1 | 2 | 1 | RRM_1 | 168 | 216 | 3.8e-09 | 36.0 | 7.2e-12 | 1.8e-08 | 33.9 |
| pfu_aug2.0_408.1_27350.t1 | 1 | 1 | RRM_6 | 168 | 215 | 9.5e-06 | 25.5 | 1.1e-08 | 2.8e-05 | 24.0 |
| pfu_aug2.0_408.1_27350.t1 | 2 | 2 | RRM_1 | 393 | 414 | 3.8e-09 | 36.0 | 1.4 | 3400.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_408.1_27350.t1 | gi|676425921|ref|XP_009044458.1| | hypothetical protein LOTGIDRAFT_184925 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_408.1_27350.t1 | gi|542172624|ref|XP_005467427.1| | PREDICTED: ecto-NOX disulfide-thiol exchanger 2-like isoform X4 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_408.1_27350.t1 | gi|542172610|ref|XP_005467424.1| | PREDICTED: ecto-NOX disulfide-thiol exchanger 2-like isoform X1 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_408.1_27350.t1 | gi|542172630|ref|XP_005467428.1| | PREDICTED: ecto-NOX disulfide-thiol exchanger 2-like isoform X5 [Oreochromis niloticus] | 0.0 |
| pfu_aug2.0_408.1_27350.t1 | gi|584017089|ref|XP_006803291.1| | PREDICTED: ecto-NOX disulfide-thiol exchanger 2-like isoform X1 [Neolamprologus brichardi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_408.1_27350.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_408.1_27350.t1 atgtcttttaaccaaggtttaattggtcctcaaatgcccttagatcctatgagaaacaaccagcctttacagttcaacac aaataaaggaaagcctcctatgccagtagagggggacttggacagaaatgatccctacccagacagcagcaccccggggg agatgatgggtggcggaggcatgtatggaggaccatccgggccagggatgggagacatgagcttccctgggggaaacatg atgcagggtgggggaaacatgatgcaggggaatatgatgggatcagatccgaacatgatgatgatgttcaatcagtatgg taacctcggacccaatggtcctaacttaggttccagtggtccatggttaaaccagaacatcattaatcctatattcctcc ctaaagaaatcatcacactcaagagctcagtcctgtatcctcctccaccaaatgctgccccacccacaacaagggagaga cccccagggtgtcgtacagcatttgttggaggtctaccagaaaacgtcacagaagatatgattctagagatatttgagaa ttttggtgttatttgcagtatcagaaaaggaaagaaaaatttctgtcatattcgttttgagttggaagacagtgtggaca gatctttatacatatctggctataggatgaagattgaggataaggatgacaagcctaacacgggccgactccacgtggat tacgccatggcgcgagacgaccagtacgagtttgagtgtaagcagaggatgatggctcgagagatgagacatagacagag attagaggaggagagaatacgaccaccaagtccaccacctattgtacacttcagtgatcatgaagccaatagtctgatgg acagacttaaatctgaggatggtttcatgaaggcatctctgatcctgctaacatggctagaaagaggggatctcaccaag cgtaatgttaacatcttctacagcatggtacagtgtacgaactcccaggtcaggcggcttatggcagaaaaacaacagca cgaagaagagctcgtcaaaatgaaggaaaatttcaaaaagatttttgaaggaattttacatcagtttgatcagattgaga aagtctttagcctagctcacaagcagaggaactgggatcatttcagtaaggctcagcgaaagaatatagaactctggttc agacaagcccagtcattgaaaagtttgaacataatgtatcaaactatttttcatggtttaaaacattgtacaaaatggat tgtgaacagtgtggaaaagcacaacttgcgagaggagaatgattcactaaagtgtcaggtggaggcatttaaaaatgaga tagagatggtcaaacatgaaaataaagcagctttgtcagagaaagaaagtcagctaaaacttctacaacaggccatgcag ggaatgcagcagcaactgatacaatcaaaatcagaagtaaaagaactacagacaaagatgtccacaatgagaactacaat gaaagctacggagtcacaagagaaaaaggatgaagagaaagaagttaaagaagacacaacaaaaagtagtacagagaaat caacgaatgatgttataattgtgacatcaccagccaaggaggtatctgcttccactgtcagtagtagtggtatggcacta acggaaaaggagggcagacttattgataattggataaaaaaagagaggcaaagtaggtag |
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Protein
| Protein ID | pfu_aug2.0_408.1_27350.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_408.1_27350.t1 MSFNQGLIGPQMPLDPMRNNQPLQFNTNKGKPPMPVEGDLDRNDPYPDSSTPGEMMGGGGMYGGPSGPGMGDMSFPGGNM MQGGGNMMQGNMMGSDPNMMMMFNQYGNLGPNGPNLGSSGPWLNQNIINPIFLPKEIITLKSSVLYPPPPNAAPPTTRER PPGCRTAFVGGLPENVTEDMILEIFENFGVICSIRKGKKNFCHIRFELEDSVDRSLYISGYRMKIEDKDDKPNTGRLHVD YAMARDDQYEFECKQRMMAREMRHRQRLEEERIRPPSPPPIVHFSDHEANSLMDRLKSEDGFMKASLILLTWLERGDLTK RNVNIFYSMVQCTNSQVRRLMAEKQQHEEELVKMKENFKKIFEGILHQFDQIEKVFSLAHKQRNWDHFSKAQRKNIELWF RQAQSLKSLNIMYQTIFHGLKHCTKWIVNSVEKHNLREENDSLKCQVEAFKNEIEMVKHENKAALSEKESQLKLLQQAMQ GMQQQLIQSKSEVKELQTKMSTMRTTMKATESQEKKDEEKEVKEDTTKSSTEKSTNDVIIVTSPAKEVSASTVSSSGMAL TEKEGRLIDNWIKKERQSR |
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