Gene
| Gene Model ID | pfu_aug2.0_408.1_27352 |
|---|---|
| Locus | scaffold408.1 : 49576 ... 88000 : + |
| To GenomeBrowser | scaffold408.1:49576..88000 |
| Genes list of scaffold | scaffold408.1 |
| Synonym | pfu_aug1.0_63.1_14771 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_408.1_27352.t1 | 2 | 1 | RBP_receptor | 32 | 250 | 0.0 | 328.9 | 2.0e-30 | 3.0e-26 | 91.9 |
| pfu_aug2.0_408.1_27352.t1 | 2 | 2 | RBP_receptor | 357 | 661 | 0.0 | 328.9 | 0.0 | 0.0 | 242.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_408.1_27352.t1 | gi|527255102|ref|XP_005145835.1| | PREDICTED: stimulated by retinoic acid gene 6 protein homolog [Melopsittacus undulatus] | 2.00386e-43 |
Transcript
| Transcript ID | pfu_aug2.0_408.1_27352.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_408.1_27352.t1 atggcggatctgttgtatctgtgggactatatacaacgggacctcatcctagcaggggaccaaaactacactgtggagcc tttagaaatcacagagatatgctatcctcagttcccagaggaccagttcaggacgatggctgtagtccctgcgttcatat gttccctgatcctagccttcacgcagaagaggaggtacatcaagcggtcattcctaaatgggagacccggtctgatgcat cctatggacgtgttgagtcgctcacaccgattctcttacgctgcagcattcggaatcctgagtaacctgtgttttaacgt tattgtcaaccagcaacaggctgtcaaatatgacggaccaacgtacttcaaagtatttgtggttctcctgaccatgctga tcaatggggtaacatactatccactgttcgcggctttggcggtacagaattcactcggctactttattgggacgctgttt gcctgggcgttcgccggtgtttatatctccaacacctttatctgcacctacaatgcgataaacttcgtcacattgttcat aaacgagggcccgattatgctgtgccatttgtacctgattttcagtctacctattcgatttgtttggtcattcaaacgga aaagaaaactgaagtttgcagtggattttgacagttctgctgatctttacgattcaataaggaattcctaccagggtatt catgtcaggaagctgtatgctaaacctcctccccctccaagctttgcggtggtccttgtggtcaggtttcggacaaatgg gtccaacactaactcttttcagtcaatacggacaggtttccaatggcatccatgttgggttcgaatgataccgccagcag aagtaatagctgaaatatgttatgacaaaaagaaagtcaagatcaccctaaaacgaattcgcgcaagtgaaaagcttcgt gtaccatacgaagggggaagtgtaacgaaatataagccgtatactgtctccccggcagttccgttagctttgtcggccac aaactacttgacaatcctgagaggttacgagcaagaagcaactgaactgctcaaagctgccaagtactcagttttctgtg tccgagtgatttatctgatcacctttcccctgacgtttgtgataggcgttgtgatgattctgcgctcattagctaattac agatatctcctgaaaaagctgtatgcacgcaattattgtcacctgactccgaaggatgagataggcaactgctccgcctt ggttggcagcatgaggtatgctggatatcaagtgggatacattgtatggggatatctggtccagtttttgttgttgacat ttttggcttcgattctatcagccattatacagctttggccattcctggacacctggatcattgacaaaatacatgccatt tggccagttcttctgaccagtttcgtcataaatataatacaattactcttggcaaagttcattttcctgcaagaaagagg cgaacaactggccattgagaatagacggctattcttcatcatgacgtactttatgttcttctacaacatcttcataggtt tggtatcgtgtctttttcgcatccttaaatctatgatcctcggttcactgttaataccgaggcttgacctcagtgtatta ccgaggaaattccagagatttgatcctggattccatgccttctgtggatttatgcatgttgaaagcgcgcatacccaccc ggttataatggtgtttattagtattttacaagcagagtctttcaacactctcaaagctaacagtgaaaaaccctcactca agtccatgatgggtaagagcattgctaccgtgaatggtacgtatgatatggtacagagtaaacgcagcagaaaagcccga tggcagtggttaatagcctataccctgatccagaaccccaccctgtgtctggagagaaagatagcattggctaaacagaa aaatgagtctattataatgtcagtgttacaggataattacgaggcgactccagcggaaaaaatcgatattcaaatctga |
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Protein
| Protein ID | pfu_aug2.0_408.1_27352.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_408.1_27352.t1 MADLLYLWDYIQRDLILAGDQNYTVEPLEITEICYPQFPEDQFRTMAVVPAFICSLILAFTQKRRYIKRSFLNGRPGLMH PMDVLSRSHRFSYAAAFGILSNLCFNVIVNQQQAVKYDGPTYFKVFVVLLTMLINGVTYYPLFAALAVQNSLGYFIGTLF AWAFAGVYISNTFICTYNAINFVTLFINEGPIMLCHLYLIFSLPIRFVWSFKRKRKLKFAVDFDSSADLYDSIRNSYQGI HVRKLYAKPPPPPSFAVVLVVRFRTNGSNTNSFQSIRTGFQWHPCWVRMIPPAEVIAEICYDKKKVKITLKRIRASEKLR VPYEGGSVTKYKPYTVSPAVPLALSATNYLTILRGYEQEATELLKAAKYSVFCVRVIYLITFPLTFVIGVVMILRSLANY RYLLKKLYARNYCHLTPKDEIGNCSALVGSMRYAGYQVGYIVWGYLVQFLLLTFLASILSAIIQLWPFLDTWIIDKIHAI WPVLLTSFVINIIQLLLAKFIFLQERGEQLAIENRRLFFIMTYFMFFYNIFIGLVSCLFRILKSMILGSLLIPRLDLSVL PRKFQRFDPGFHAFCGFMHVESAHTHPVIMVFISILQAESFNTLKANSEKPSLKSMMGKSIATVNGTYDMVQSKRSRKAR WQWLIAYTLIQNPTLCLERKIALAKQKNESIIMSVLQDNYEATPAEKIDIQI |
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