Gene
| Gene Model ID | pfu_aug2.0_4121.1_05945 |
|---|---|
| Locus | scaffold4121.1 : 26792 ... 41335 : - |
| To GenomeBrowser | scaffold4121.1:26792..41335 |
| Genes list of scaffold | scaffold4121.1 |
| Synonym | pfu_aug1.0_989.1_22403 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| metalloproteinase inhibitor 4 | GO:0009892 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4121.1_05945.t1 | 2 | 1 | TIMP | 27 | 153 | 4.7e-34 | 117.5 | 6.3e-25 | 4.7e-21 | 75.2 |
| pfu_aug2.0_4121.1_05945.t1 | 2 | 2 | TIMP | 158 | 254 | 4.7e-34 | 117.5 | 2.4e-15 | 1.8e-11 | 44.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4121.1_05945.t1 | gi|602637587|ref|XP_007425636.1| | PREDICTED: metalloproteinase inhibitor 4 [Python bivittatus] | 8.0e-12 |
| pfu_aug2.0_4121.1_05945.t1 | gi|260828073|ref|XP_002608988.1| | hypothetical protein BRAFLDRAFT_187194 [Branchiostoma floridae] | 2.0e-10 |
| pfu_aug2.0_4121.1_05945.t1 | gi|573874010|ref|XP_006625428.1| | PREDICTED: metalloproteinase inhibitor 4-like [Lepisosteus oculatus] | 6.0e-09 |
| pfu_aug2.0_4121.1_05945.t1 | gi|734617014|ref|XP_010736179.1| | PREDICTED: metalloproteinase inhibitor 3 isoform X2 [Larimichthys crocea] | 6.0e-09 |
| pfu_aug2.0_4121.1_05945.t1 | gi|390341777|ref|XP_003725523.1| | PREDICTED: metalloproteinase inhibitor 3 isoform X1 [Strongylocentrotus purpuratus] | 1.0e-08 |
Transcript
| Transcript ID | pfu_aug2.0_4121.1_05945.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4121.1_05945.t1 atgacaagaaccatcctcattataagtcttctagcggtattctcttcttggattggaattacaaatggatgtaaaccttg tgccccgtcccatccccataaacagttctgtcgggccgcttttgtcatcaaaggaagaatttgtggactctatatgaagc cattccggcatggacatggttttatggagagcaaaagatatactgtcgcaattctcgaagtgtttaagggtcattttgac aagaaacgcatacacctatattctccgggaataaagaggaaatgtggagtgaatcttaatcttggacaagtatttttact ctcaggatatgtggataaaaagaatagataccgaattaatacatgtaattggagttccaaatttagtgaactatcaagtg gtcaagatgttttcctgcgaactggactgtatgccaaaaactgtccttgtgggagaaagggttcatgtaaaagtcacaag aaaatacacattgaaaccggaggtaacagtgcagcatgcggggttatcataccaaaaggagcggtatggctacttacagg tactgttagcaataagaagtacagaataggactttgtggatggaatgcaccctggagtagtataccttggccacagaaga aaatgctactaagcggtatctacaaagcaaactgtgggtgtggcaaaacggtatctgaaagtaaaattgtactgagtgcg aggtgctttctcacagttgagagcaaagtctggatggagtcagcttcgtatgaatataaaaataagtccggaagtagtgg ggagcaattgctacccataaggataccaactatttgctcctaa |
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Protein
| Protein ID | pfu_aug2.0_4121.1_05945.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4121.1_05945.t1 MTRTILIISLLAVFSSWIGITNGCKPCAPSHPHKQFCRAAFVIKGRICGLYMKPFRHGHGFMESKRYTVAILEVFKGHFD KKRIHLYSPGIKRKCGVNLNLGQVFLLSGYVDKKNRYRINTCNWSSKFSELSSGQDVFLRTGLYAKNCPCGRKGSCKSHK KIHIETGGNSAACGVIIPKGAVWLLTGTVSNKKYRIGLCGWNAPWSSIPWPQKKMLLSGIYKANCGCGKTVSESKIVLSA RCFLTVESKVWMESASYEYKNKSGSSGEQLLPIRIPTICS |
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