Gene
| Gene Model ID | pfu_aug2.0_4129.1_32623 |
|---|---|
| Locus | scaffold4129.1 : 13446 ... 21315 : - |
| To GenomeBrowser | scaffold4129.1:13446..21315 |
| Genes list of scaffold | scaffold4129.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4129.1_32623.t1 | 2 | 1 | zf-TRM13_CCCH | 15 | 43 | 1.5e-10 | 40.2 | 4.1e-14 | 1.5e-10 | 40.2 |
| pfu_aug2.0_4129.1_32623.t1 | 1 | 1 | zf-U11-48K | 55 | 79 | 5.8e-07 | 29.0 | 3.0e-10 | 1.1e-06 | 28.1 |
| pfu_aug2.0_4129.1_32623.t1 | 1 | 1 | TRM13 | 161 | 494 | 0.0 | 255.2 | 0.0 | 0.0 | 251.0 |
| pfu_aug2.0_4129.1_32623.t1 | 2 | 2 | zf-TRM13_CCCH | 316 | 321 | 1.5e-10 | 40.2 | 4.0 | 15000.0 | -5.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4129.1_32623.t1 | gi|676423271|ref|XP_009044086.1| | hypothetical protein LOTGIDRAFT_102700 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_4129.1_32623.t1 | gi|512933921|ref|XP_004907533.1| | 0.0 | |
| pfu_aug2.0_4129.1_32623.t1 | gi|635106318|ref|XP_007976014.1| | PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Chlorocebus sabaeus] | 0.0 |
| pfu_aug2.0_4129.1_32623.t1 | gi|348586507|ref|XP_003479010.1| | PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Cavia porcellus] | 0.0 |
| pfu_aug2.0_4129.1_32623.t1 | gi|332222010|ref|XP_003260157.1| | PREDICTED: tRNA:m(4)X modification enzyme TRM13 homolog [Nomascus leucogenys] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4129.1_32623.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4129.1_32623.t1 atgatggaggattctgtctctgtcaacaaaactcccccctccggccaatgcgcttttttcctagaaagaaagaaacgttt ttgtcgtttcagaccatctgtaaatgagatatattgtgcagagcacgcaggtttactgggaattgagcagggaaaaaaga ggatagtgtgcccattagatccaaaacacacttgctttgaggacaaacttgagaagcaccttaaaaaatgtagaaatcaa cagaaagacctaccagcttaccatgttcctggtattaacagtgggacatcacaggaagatctccaagctaagataccttg gcaggagatttcctcacaacagttgaaggaattgatacagagagtcaatactttgtatgatgaatatataggcagtgtaa ataaagaaatacttcaccatccctgtttggatgaggagctttccaataagacgtatggcattcctgctattagacacaga aaacagcaggcctctctgattggtcacctacagcagatggatctactcagatctgggctttgttatgtggagcttggagc aggaaagggtaatttatcccactggatccagagagcaatgcctgacgagatggaggtggcttttgttctgatagacagag ggactgttaggtataaggccgataaccaacacaaatgggaggataatggaccaaagtttgagaggttgagaatggatata gagcacttacatctaggcaaggtagggagtatagctaatggaagaaaaccagtagtggctacaggaaaacatctgtgtgg ggcagcaacagatttagcactgagatgtgtgacaaagactatagagtccataggtgatgataaaaatgccgagccaaatt ctaaaaagcagaaaacagggaatgataatgaagacaatattacattagccggggtctgtatagcactgtgttgtcatcat agatgtaactggaaagcctatgttggtaaggactttatttaccagtgtggcttgtctgcgagggaattccagattctatg taaactgagtggatggacagctgccacgtggacaggatggaaaacaagggcggaaatggaaaatacgtcaaactctctta aatcagacaagggacatgacatagatttgaaagggattgaaaatgccagagtaattaatgttggtgaagaaagtttgaaa aatttagatgattgtgtaaaaagtgataataaacatattaatgaggtcaatagtgagccaatgatagcagaggagggaga aatagaggatcacaaggctgagaaaccattaacaaggacagatttgaaccttactgtaaaagagaaagaagagattggga ggaagtgcaagcgactaattgattttggtcgagtactttacatgaaggagcagggactacaatgtgacctcagggaatac atagaagacaaacttacaccagaaaatgtggctatatttgcaaagccataa |
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Protein
| Protein ID | pfu_aug2.0_4129.1_32623.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4129.1_32623.t1 MMEDSVSVNKTPPSGQCAFFLERKKRFCRFRPSVNEIYCAEHAGLLGIEQGKKRIVCPLDPKHTCFEDKLEKHLKKCRNQ QKDLPAYHVPGINSGTSQEDLQAKIPWQEISSQQLKELIQRVNTLYDEYIGSVNKEILHHPCLDEELSNKTYGIPAIRHR KQQASLIGHLQQMDLLRSGLCYVELGAGKGNLSHWIQRAMPDEMEVAFVLIDRGTVRYKADNQHKWEDNGPKFERLRMDI EHLHLGKVGSIANGRKPVVATGKHLCGAATDLALRCVTKTIESIGDDKNAEPNSKKQKTGNDNEDNITLAGVCIALCCHH RCNWKAYVGKDFIYQCGLSAREFQILCKLSGWTAATWTGWKTRAEMENTSNSLKSDKGHDIDLKGIENARVINVGEESLK NLDDCVKSDNKHINEVNSEPMIAEEGEIEDHKAEKPLTRTDLNLTVKEKEEIGRKCKRLIDFGRVLYMKEQGLQCDLREY IEDKLTPENVAIFAKP |
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