Gene
| Gene Model ID | pfu_aug2.0_4129.1_32624 |
|---|---|
| Locus | scaffold4129.1 : 21416 ... 36370 : + |
| To GenomeBrowser | scaffold4129.1:21416..36370 |
| Genes list of scaffold | scaffold4129.1 |
| Synonym | pfu_aug1.0_57948.1_48883 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4129.1_32624.t1 | 1 | 1 | Rad60-SLD | 3 | 74 | 1.4e-07 | 31.1 | 1.3e-10 | 2.4e-07 | 30.3 |
| pfu_aug2.0_4129.1_32624.t1 | 1 | 1 | ubiquitin | 6 | 77 | 7.4e-21 | 73.3 | 6.5e-24 | 1.2e-20 | 72.6 |
| pfu_aug2.0_4129.1_32624.t1 | 3 | 1 | UBA | 173 | 187 | 6.1e-27 | 92.7 | 0.0012 | 2.1 | 8.2 |
| pfu_aug2.0_4129.1_32624.t1 | 3 | 1 | UBA_3 | 176 | 188 | 6.3e-06 | 25.6 | 0.01 | 19.0 | 4.9 |
| pfu_aug2.0_4129.1_32624.t1 | 3 | 2 | UBA | 245 | 280 | 6.1e-27 | 92.7 | 6.4e-17 | 1.2e-13 | 50.4 |
| pfu_aug2.0_4129.1_32624.t1 | 3 | 2 | UBA_3 | 248 | 267 | 6.3e-06 | 25.6 | 2.3e-06 | 0.0043 | 16.6 |
| pfu_aug2.0_4129.1_32624.t1 | 1 | 1 | XPC-binding | 344 | 401 | 1.2e-24 | 85.5 | 1.1e-27 | 2.0e-24 | 84.7 |
| pfu_aug2.0_4129.1_32624.t1 | 3 | 3 | UBA | 434 | 468 | 6.1e-27 | 92.7 | 1.5e-11 | 2.8e-08 | 33.3 |
| pfu_aug2.0_4129.1_32624.t1 | 3 | 3 | UBA_3 | 434 | 452 | 6.3e-06 | 25.6 | 0.6 | 1100.0 | -0.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4129.1_32624.t1 | gi|171906578|ref|NP_033037.2| | UV excision repair protein RAD23 homolog B [Mus musculus] | 0.0 |
| pfu_aug2.0_4129.1_32624.t1 | gi|505768057|ref|XP_004600342.1| | PREDICTED: UV excision repair protein RAD23 homolog B [Sorex araneus] | 0.0 |
| pfu_aug2.0_4129.1_32624.t1 | gi|387849175|ref|NP_001248717.1| | UV excision repair protein RAD23 homolog B [Macaca mulatta] | 0.0 |
| pfu_aug2.0_4129.1_32624.t1 | gi|685592284|ref|XP_009186620.1| | PREDICTED: UV excision repair protein RAD23 homolog B isoform X1 [Papio anubis] | 0.0 |
| pfu_aug2.0_4129.1_32624.t1 | gi|724947038|ref|XP_010387756.1| | PREDICTED: UV excision repair protein RAD23 homolog B [Rhinopithecus roxellana] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_4129.1_32624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4129.1_32624.t1 atgtttatcacactaaagaccttacagcaacaaacatttaaagtggaaattgatggagacagcacggtgaaaattttgaa agaaaaaattgaagctgagaaaggaaaagatggcttccctgcaacaggtcaaaaactcatatatgcaggaaaaattcttg atgatgaaaagaagattgcagaatataaaattgaagagaagaattttgtagttgtgatggtaacaaagcccaaggcagcc ccggctcctcccaaacctgcggaacctgctcctacccctgcagcaacggagtcgaaacctctcgaggaagaagtcaaaaa ggaagaaccaaaatcagaatcaacaccaagtgaacctgccccagcagcccctgtatccacagcaacaacccctgctgcca tggaaacgactccagctgccacggcgacagcatcacaaacagcatcagcagggtcaggtgtgtcaccgtctgaccctaca ctccaggctagcggtttactggtgacaggggaggactatgagaagatggtacaagaaatcacatccatgggctttgagag agntaatgaacctgccccagcagcccctgtatccacagcaacaacccctgctgccatggaaacgactccagctgccactg cgacagcaccacaaacagcatcagcagggtcaggtgtgtcaccatctgaccctacactccaggctagcggtttactggtg acaggggaggactatgagaagatggtacaagaaatcacatccatgggctttgagagggaacaggttgtgcgggccttacg tgctagctttaataaccctgacagggcagtggagtaccttttcagtggtattcctgatgttcctgcagagccagaggcac cgactgctacccagaccgccccacccaccactcctactggagggggtgggaccacaacatcaaccacacccccaacagcc acacccccagcatctactgaatcaataccggtatcgagcatacctacacccagaccaggtgaagatcctttagcattttt gaggacacaacctcagtttcagaggatgagacagctcatacaagaaaatccacagtttctccctgctcttctacaacaaa taggtcaatcaaatccacccctcttacagatgattagtcagaatcaagaacgatttatacaaatgttaaatgagccagtg gagggccagggatctgaggcaccagcgcttggtactgcaccaggtggtgtagcccctcccatgggtgcaggaaattatat tcaagtcacacctcaagaaaaagaagcaatagaaaggttgaaagctttaggatttccagaggggatgtgtattcaagcat actttgcatgtgaaaaaaatgaggacatggctgcaaattttctactttcacagaactttgacgatgatgatcagagttga |
|
Protein
| Protein ID | pfu_aug2.0_4129.1_32624.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4129.1_32624.t1 MFITLKTLQQQTFKVEIDGDSTVKILKEKIEAEKGKDGFPATGQKLIYAGKILDDEKKIAEYKIEEKNFVVVMVTKPKAA PAPPKPAEPAPTPAATESKPLEEEVKKEEPKSESTPSEPAPAAPVSTATTPAAMETTPAATATASQTASAGSGVSPSDPT LQASGLLVTGEDYEKMVQEITSMGFERXNEPAPAAPVSTATTPAAMETTPAATATAPQTASAGSGVSPSDPTLQASGLLV TGEDYEKMVQEITSMGFEREQVVRALRASFNNPDRAVEYLFSGIPDVPAEPEAPTATQTAPPTTPTGGGGTTTSTTPPTA TPPASTESIPVSSIPTPRPGEDPLAFLRTQPQFQRMRQLIQENPQFLPALLQQIGQSNPPLLQMISQNQERFIQMLNEPV EGQGSEAPALGTAPGGVAPPMGAGNYIQVTPQEKEAIERLKALGFPEGMCIQAYFACEKNEDMAANFLLSQNFDDDDQS |
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