Gene
| Gene Model ID | pfu_aug2.0_416.1_20743 |
|---|---|
| Locus | scaffold416.1 : 161206 ... 178281 : + |
| To GenomeBrowser | scaffold416.1:161206..178281 |
| Genes list of scaffold | scaffold416.1 |
| Synonym | pfu_aug1.0_424.1_50858 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| indian hedgehog protein | GO:0005615 GO:0007224 GO:0007389 GO:0010770 GO:0016020 GO:0016787 GO:0030166 GO:0033081 GO:0035239 GO:0035988 GO:0042127 GO:0043010 GO:0045581 GO:0046872 GO:0048562 GO:0048729 GO:0051240 GO:0060429 GO:0060591 GO:0072358 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_416.1_20743.t1 | 1 | 1 | HH_signal | 27 | 188 | 0.0 | 278.7 | 0.0 | 0.0 | 277.9 |
| pfu_aug2.0_416.1_20743.t1 | 1 | 1 | Hint | 191 | 367 | 0.0 | 211.9 | 0.0 | 0.0 | 211.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_416.1_20743.t1 | gi|676465781|ref|XP_009057354.1| | hypothetical protein LOTGIDRAFT_121665 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_416.1_20743.t1 | gi|556994845|ref|XP_006001335.1| | PREDICTED: sonic hedgehog protein [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_416.1_20743.t1 | gi|6175032|sp|Q92000.1|SHH_XENLA | Sonic hedgehog protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_416.1_20743.t1 | gi|525003841|ref|XP_005049621.1| | PREDICTED: indian hedgehog protein [Ficedula albicollis] | 0.0 |
| pfu_aug2.0_416.1_20743.t1 | gi|45384428|ref|NP_990288.1| | indian hedgehog protein precursor [Gallus gallus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_416.1_20743.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_416.1_20743.t1 atgcgaaagctgaccaaaacgacgcgcgtggagctagctacagtagtgttcttgcttctgaccgggccagccctgcagtg taataccgggcgcggggcgggcagcagattccggcgaggcaataaagggacaccactcgtgcacaaccaacatgttccaa atgtttcggagaatactttgggtgctagtggtgtcgccgaaggaagaattcggaggggagacgagaggtttaagaagtta gtgacaaacgacaatccaaatatcatatttaaggatgaggagggggacgggtcagatagaatcatgtcacagagatgcaa agacaaactgaattctctagccatctctgtgatgaacacgtggcctggggtcaaattaagggtcacagaggcttgggatg aggacggtcaccatgcaaaggactcactacattatgaaggtcgagcagttgacataacgaccagtgataaagacagggca aaatatggaatgttggcgcgtttagccgtggaagcaggatttgattgggtgtattacgaatcacgtggtcatatccattg ttctgttaaatcagattcgagtgctgccattaagattggaggctgcttctccggaacaagcattgttacgacggaagggt ctggaaagattcctatgtcggacctcgccgttggagatcgagttttaagtataacaagtgacggaacgctaaaatatagt gacgtcattacattcctggatagagacaaaaatcgggttgggaatttcttcaatattctaacatctgatcaaagaaagat aactctgacagataaacatattttatatgtgtcgcatcaaaactcttcaaagttatcagattatctgccagtttttgcag aaaaagtgactacaaatgattatgtgttaattacacataaagatattgaaataaaggcatcaaaagtagtgcagattgac actctttccagcagcggcgtatacgcaccgcttacgtacgacggaactatagttgttgatgacgtcatcgcatcttgtta tggagttataaagaatgaatacattgcgcatgcgtcatttgcgcccatgcgtgcgatgcatggtggcaagtga |
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Protein
| Protein ID | pfu_aug2.0_416.1_20743.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_416.1_20743.t1 MRKLTKTTRVELATVVFLLLTGPALQCNTGRGAGSRFRRGNKGTPLVHNQHVPNVSENTLGASGVAEGRIRRGDERFKKL VTNDNPNIIFKDEEGDGSDRIMSQRCKDKLNSLAISVMNTWPGVKLRVTEAWDEDGHHAKDSLHYEGRAVDITTSDKDRA KYGMLARLAVEAGFDWVYYESRGHIHCSVKSDSSAAIKIGGCFSGTSIVTTEGSGKIPMSDLAVGDRVLSITSDGTLKYS DVITFLDRDKNRVGNFFNILTSDQRKITLTDKHILYVSHQNSSKLSDYLPVFAEKVTTNDYVLITHKDIEIKASKVVQID TLSSSGVYAPLTYDGTIVVDDVIASCYGVIKNEYIAHASFAPMRAMHGGK |
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