Gene
| Gene Model ID | pfu_aug2.0_4190.1_02576 |
|---|---|
| Locus | scaffold4190.1 : 755 ... 21235 : - |
| To GenomeBrowser | scaffold4190.1:755..21235 |
| Genes list of scaffold | scaffold4190.1 |
| Synonym | pfu_aug1.0_6495.1_31211 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4190.1_02576.t1 | 4 | 1 | fn3 | 691 | 725 | 1.1e-07 | 31.8 | 0.16 | 2400.0 | -1.3 |
| pfu_aug2.0_4190.1_02576.t1 | 4 | 2 | fn3 | 821 | 850 | 1.1e-07 | 31.8 | 0.1 | 1500.0 | -0.7 |
| pfu_aug2.0_4190.1_02576.t1 | 4 | 3 | fn3 | 948 | 1016 | 1.1e-07 | 31.8 | 3.3e-06 | 0.048 | 13.7 |
| pfu_aug2.0_4190.1_02576.t1 | 4 | 4 | fn3 | 1079 | 1154 | 1.1e-07 | 31.8 | 1.4e-05 | 0.21 | 11.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4190.1_02576.t1 | gi|260781872|ref|XP_002586021.1| | hypothetical protein BRAFLDRAFT_110187 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_4190.1_02576.t1 | gi|260786946|ref|XP_002588517.1| | hypothetical protein BRAFLDRAFT_79472 [Branchiostoma floridae] | 1.00053e-42 |
| pfu_aug2.0_4190.1_02576.t1 | gi|260830953|ref|XP_002610424.1| | hypothetical protein BRAFLDRAFT_85562 [Branchiostoma floridae] | 3.00018e-42 |
| pfu_aug2.0_4190.1_02576.t1 | gi|585684861|ref|XP_006820035.1| | PREDICTED: uncharacterized protein LOC102804825 [Saccoglossus kowalevskii] | 8.00001e-41 |
Transcript
| Transcript ID | pfu_aug2.0_4190.1_02576.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4190.1_02576.t1 atgtcccatatgagtatgaacatgttacacgcccttgctctagggcttacaattgtagtgagaaaagcacctgatttact tacatgcagaattggcgctcagaatgacaaaggatctgcagtgaactctacaagcgggagatgtttccacaaggagaatg tgtacatgaatttccaagcaaagtatttgtcattcacgttcacatcagagttcagtattccaaattataccatcccaatg cacataactgaattcaaaacaggacttgtcggagctgaaataaatgttttcaagaaagataagatttgcctaagatatgt tgggaaagctggtggatatctggtgtatgaagatttcgataataagacatatcctagagaatactacacaccgacatcaa acagctccgaactgtgtatttaccttgatgttactcaaccaatgcactgttcagagaatatgtcctgttcggaagaacct atccagatctcgtccaggatactagataatccagaagtcgaaataatggcgaacggatggtttgatccttttccagtcaa tcctgatcaagcttcgaaaataaagtcagtatctctttctgtacatgaagttaaggaagtaaataactctacacttacga tggatgagaaatcaatcccagacatgaagttcaatgtttcaggttcttcgcttaaagtaattcttccaagtaaagcccct ggtttatatggtctcacattagaagttgttgatcatgcactgaacccaaaatatgccagaagattcgttttgttcgataa ctcttccaatcttcttatacgaggcgacaagaaactaagagttgatacaggtgatatgggtactaactatacttggcaga cacatctacgagatgtatgcttatcttggcacggaagatactacaattctttccacgttcattacaatttacttcggaag ataaagcctgactaccatggtttctataatggagtgtacgaacagttatcaggtgacctaccggtatcaggtactgtaaa cgtggatgggattgtagattttatgtataactggaccaacgtaagaacaaagacagtatcgaaagagaaatctatcaggc tagtgacagaccaacaattctgtgaaaatcttggaatatctgatggcgactcgtttgttatttccatcacatcagttgat ataatgaagagaacacttacagaagatatcgttcttaacattgattccagtgttccagatataacagacatgtgggtact caggaatggagttagacaattgtttgtacataattccactgaacttcagaacatggttatagagttttcaatacttgata tacatagtgggatatattcaatacagtggcagctaggaactactccacatggccatgaactcggtataggtgctatagca gtacatagacttccggagtccaaggaaaaagtttgcatcagctcaccatttctacgacatcgtagtatacaagcatgtat cagaggagtttgtcaatcgtcatcatcaacggtcgcctgtgtccctctgatatctagttatcatcccaatgaatttgacc caaatactgtatatgaagtcaaaacaaatgatatagaccttacccacatgcagcaattgatgtccagtaactttcttgaa gatcagattaaaattatccaggacaaagaagtagatttcataaaagcctcagccaaaatcacgggtcttttgctaaatcc tgaagggaggaaaataagctggtttctcacaacaagtcctcaagtaccaacattaacatgttcggatgatccaagttgtg taatgtcaattaattcttcaaatggagttgggaggttcagacatatatcattcgttgaaaaccagaaatattttgtttgc gcacatttaccatttgttactattgacaaaatgcatcatcctttgaaactagcagaaatatcatcgtgtggaaacggatt cattgttgatgactctgctccacaagccggagatgttaggataagggcaaatggctatgggttttcaagtagcggaaaca cgctaactttgtcatggtttggttttgatgacatagaagcaatggttgacattggaaatctcaaagtcgagaaagcaaag caaaatcatgagaattcccatcgaaacgattgcgaaccaaggaatgaacaacattccgaagtgagaccagatgcccgggg agagtcagcgtctcctgattgcaaagaacacccgtcgcaacatctccatggaaatctgtcaaattcggtgattgtctcga tgtacattttgatgtacagatcagctcgagactttgttggaaatgaagttaagtcaatatcaccaggcattaccatagat tactccgcgccagttactggaatagtatgggttgggaatccataccaaaaatttcccattgtgtcagcaagcagtctggt tgtccactgggaagggttttatgataaagacagcggaatccaaagaattgatgtcggactaggaagttcaaatgcttctg ccgatttaattaccattcgagacgtaaagggaactccgctaaaacttaaggacattggattggtcgatggacattactac tactctcatataattgtccacaactttgccgatcttatgacaacatcagtatctcgtcctttcatggttgattcctcacc tccacatgttggtgtcgttgttgatggagactcatctgaaaaggtacactcaaaatatgaggcaagtttaaaactgttta gtcatatacaagtactgaccgacgtggactttcaaagggacgtaacaacgttgtgtgtacattggaacggattccttgat ccccattcaaagttatcatattatgaggttagcattggtacagttcctggagacacggatgtactggattggactaatgt aggactgaaaacagaagaaacatggcacaatctgtttgaagctggagtgaaatattataccactgtaagagcctgtaaca aagtaggtttatgtacagatgctacatcagacggagtgataatggataattctcctcccgtaccaggaatgatacatgtg ggccgcagtgacaaccatcaacaatacatagctcacaaagttgatgtatcgccaccaatatctcaaagtaaaccatcatt cataagcgagccctacatgtcattgaaaaccggatctcaaatcgacaattctttgctcactctgaaatggaatttcagtg ataatgaaagtcccataactgattactcaatatttcttcacacccacgagaagggacacatcgaagaacaaattttgacg tttggagctcgaaactcgacatcgatacaactggaaaaagataaactattaaaagacggggacacgtacacagcatgggt tacaggatgcaatgctgcaggtttgtgtaccgaagaccactcggacctcttactaattgactcaactccaccacatctgg gaggcttcaaaaatatgatgaaatggaaaaataaaattgcaggaaacagaacggtgacggaactatttctacaatgtaac gccccacggatgactggttctcctgcaacgagtgtcaaggggacatccgataaactactgatcgattgggacagtgtgtt tcagtcacaggagcaaggaaaattggtgtacgtgtttgccgttggaagtcggaagggatatgtagacatccaaaggccca tagaaacaatgggaacaaatatgaccgtaagcctggaaggcgacaccaaggaaatattccttagcattcatgcttttgct ccgaatctggaagcttcgcattattctgcgatgattcatacttag |
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Protein
| Protein ID | pfu_aug2.0_4190.1_02576.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4190.1_02576.t1 MSHMSMNMLHALALGLTIVVRKAPDLLTCRIGAQNDKGSAVNSTSGRCFHKENVYMNFQAKYLSFTFTSEFSIPNYTIPM HITEFKTGLVGAEINVFKKDKICLRYVGKAGGYLVYEDFDNKTYPREYYTPTSNSSELCIYLDVTQPMHCSENMSCSEEP IQISSRILDNPEVEIMANGWFDPFPVNPDQASKIKSVSLSVHEVKEVNNSTLTMDEKSIPDMKFNVSGSSLKVILPSKAP GLYGLTLEVVDHALNPKYARRFVLFDNSSNLLIRGDKKLRVDTGDMGTNYTWQTHLRDVCLSWHGRYYNSFHVHYNLLRK IKPDYHGFYNGVYEQLSGDLPVSGTVNVDGIVDFMYNWTNVRTKTVSKEKSIRLVTDQQFCENLGISDGDSFVISITSVD IMKRTLTEDIVLNIDSSVPDITDMWVLRNGVRQLFVHNSTELQNMVIEFSILDIHSGIYSIQWQLGTTPHGHELGIGAIA VHRLPESKEKVCISSPFLRHRSIQACIRGVCQSSSSTVACVPLISSYHPNEFDPNTVYEVKTNDIDLTHMQQLMSSNFLE DQIKIIQDKEVDFIKASAKITGLLLNPEGRKISWFLTTSPQVPTLTCSDDPSCVMSINSSNGVGRFRHISFVENQKYFVC AHLPFVTIDKMHHPLKLAEISSCGNGFIVDDSAPQAGDVRIRANGYGFSSSGNTLTLSWFGFDDIEAMVDIGNLKVEKAK QNHENSHRNDCEPRNEQHSEVRPDARGESASPDCKEHPSQHLHGNLSNSVIVSMYILMYRSARDFVGNEVKSISPGITID YSAPVTGIVWVGNPYQKFPIVSASSLVVHWEGFYDKDSGIQRIDVGLGSSNASADLITIRDVKGTPLKLKDIGLVDGHYY YSHIIVHNFADLMTTSVSRPFMVDSSPPHVGVVVDGDSSEKVHSKYEASLKLFSHIQVLTDVDFQRDVTTLCVHWNGFLD PHSKLSYYEVSIGTVPGDTDVLDWTNVGLKTEETWHNLFEAGVKYYTTVRACNKVGLCTDATSDGVIMDNSPPVPGMIHV GRSDNHQQYIAHKVDVSPPISQSKPSFISEPYMSLKTGSQIDNSLLTLKWNFSDNESPITDYSIFLHTHEKGHIEEQILT FGARNSTSIQLEKDKLLKDGDTYTAWVTGCNAAGLCTEDHSDLLLIDSTPPHLGGFKNMMKWKNKIAGNRTVTELFLQCN APRMTGSPATSVKGTSDKLLIDWDSVFQSQEQGKLVYVFAVGSRKGYVDIQRPIETMGTNMTVSLEGDTKEIFLSIHAFA PNLEASHYSAMIHT |
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