Gene
| Gene Model ID | pfu_aug2.0_42.1_06805 |
|---|---|
| Locus | scaffold42.1 : 48386 ... 108751 : + |
| To GenomeBrowser | scaffold42.1:48386..108751 |
| Genes list of scaffold | scaffold42.1 |
| Synonym | pfu_aug1.0_1219.1_22494 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| receptor-type tyrosine-protein phosphatase beta isoform x2 | GO:0001570 GO:0001772 GO:0001954 GO:0004725 GO:0005515 GO:0007507 GO:0008285 GO:0010572 GO:0010642 GO:0010759 GO:0030336 GO:0032587 GO:0035335 GO:0043407 GO:0048709 GO:0050860 GO:2000272 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_42.1_06805.t1 | 6 | 1 | EB | 22 | 68 | 2.7e-06 | 27.3 | 1.4e-05 | 0.027 | 14.5 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 1 | V-set | 78 | 161 | 1.3e-23 | 83.0 | 2.1e-11 | 3.8e-08 | 33.2 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 1 | I-set | 85 | 168 | 1.2e-37 | 127.6 | 2.0e-11 | 3.6e-08 | 33.1 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 1 | Ig_2 | 85 | 167 | 2.3e-24 | 85.3 | 2.3e-07 | 0.00043 | 20.3 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 1 | ig | 86 | 153 | 4.1e-15 | 55.6 | 5.8e-07 | 0.0011 | 19.0 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 1 | Ig_3 | 87 | 155 | 1.5e-17 | 63.8 | 9.2e-06 | 0.017 | 15.6 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 2 | Ig_3 | 173 | 254 | 1.5e-17 | 63.8 | 2.5e-09 | 4.6e-06 | 27.0 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 2 | I-set | 185 | 267 | 1.2e-37 | 127.6 | 4.8e-15 | 8.9e-12 | 44.7 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 2 | Ig_2 | 185 | 265 | 2.3e-24 | 85.3 | 2.6e-08 | 4.8e-05 | 23.4 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 2 | V-set | 185 | 267 | 1.3e-23 | 83.0 | 2.6e-09 | 4.9e-06 | 26.4 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 2 | ig | 186 | 252 | 4.1e-15 | 55.6 | 4.3e-06 | 0.0079 | 16.3 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 3 | Ig_3 | 274 | 349 | 1.5e-17 | 63.8 | 7.7e-12 | 1.4e-08 | 35.0 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 3 | V-set | 275 | 361 | 1.3e-23 | 83.0 | 1.6e-09 | 3.0e-06 | 27.1 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 3 | Ig_2 | 276 | 362 | 2.3e-24 | 85.3 | 7.9e-16 | 1.5e-12 | 47.4 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 3 | I-set | 281 | 356 | 1.2e-37 | 127.6 | 1.6e-15 | 2.9e-12 | 46.2 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 3 | ig | 285 | 346 | 4.1e-15 | 55.6 | 1.4e-11 | 2.6e-08 | 33.8 |
| pfu_aug2.0_42.1_06805.t1 | 6 | 2 | EB | 366 | 404 | 2.7e-06 | 27.3 | 7.2e-05 | 0.13 | 12.3 |
| pfu_aug2.0_42.1_06805.t1 | 6 | 3 | EB | 400 | 444 | 2.7e-06 | 27.3 | 4.1e-06 | 0.0075 | 16.3 |
| pfu_aug2.0_42.1_06805.t1 | 6 | 4 | EB | 448 | 490 | 2.7e-06 | 27.3 | 6.4e-06 | 0.012 | 15.6 |
| pfu_aug2.0_42.1_06805.t1 | 3 | 1 | fn3 | 514 | 580 | 7.9e-17 | 61.1 | 1.8e-12 | 3.4e-09 | 36.7 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 4 | Ig_3 | 527 | 567 | 1.5e-17 | 63.8 | 1.4 | 2600.0 | -1.0 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 4 | ig | 550 | 568 | 4.1e-15 | 55.6 | 2.4 | 4400.0 | -2.2 |
| pfu_aug2.0_42.1_06805.t1 | 3 | 2 | fn3 | 601 | 705 | 7.9e-17 | 61.1 | 9.8e-07 | 0.0018 | 18.3 |
| pfu_aug2.0_42.1_06805.t1 | 6 | 5 | EB | 634 | 661 | 2.7e-06 | 27.3 | 4.0 | 7500.0 | -2.9 |
| pfu_aug2.0_42.1_06805.t1 | 3 | 3 | fn3 | 740 | 773 | 7.9e-17 | 61.1 | 7.9 | 15000.0 | -3.8 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 5 | ig | 816 | 860 | 4.1e-15 | 55.6 | 1.9 | 3600.0 | -1.9 |
| pfu_aug2.0_42.1_06805.t1 | 6 | 6 | EB | 826 | 833 | 2.7e-06 | 27.3 | 8.0 | 15000.0 | -4.1 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 4 | V-set | 835 | 858 | 1.3e-23 | 83.0 | 1.1 | 2000.0 | -1.4 |
| pfu_aug2.0_42.1_06805.t1 | 5 | 5 | Ig_3 | 838 | 871 | 1.5e-17 | 63.8 | 2.5 | 4600.0 | -1.8 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 4 | I-set | 853 | 870 | 1.2e-37 | 127.6 | 1.8 | 3400.0 | -2.1 |
| pfu_aug2.0_42.1_06805.t1 | 1 | 1 | Y_phosphatase | 936 | 1062 | 4.2e-29 | 101.5 | 6.3e-32 | 1.2e-28 | 100.0 |
| pfu_aug2.0_42.1_06805.t1 | 4 | 4 | Ig_2 | 981 | 990 | 2.3e-24 | 85.3 | 6.1 | 11000.0 | -3.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_42.1_06805.t1 | gi|704280829|ref|XP_010165249.1| | PREDICTED: receptor-type tyrosine-protein phosphatase V-like, partial [Caprimulgus carolinensis] | 3.0e-21 |
| pfu_aug2.0_42.1_06805.t1 | gi|670982830|ref|XP_008682511.1| | PREDICTED: receptor-type tyrosine-protein phosphatase beta isoform X2 [Ursus maritimus] | 7.0e-21 |
| pfu_aug2.0_42.1_06805.t1 | gi|752390224|ref|XP_011218553.1| | PREDICTED: receptor-type tyrosine-protein phosphatase beta isoform X2 [Ailuropoda melanoleuca] | 7.0e-21 |
| pfu_aug2.0_42.1_06805.t1 | gi|701408023|ref|XP_009997936.1| | PREDICTED: receptor-type tyrosine-protein phosphatase V-like [Chaetura pelagica] | 8.0e-20 |
Transcript
| Transcript ID | pfu_aug2.0_42.1_06805.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_42.1_06805.t1 atggtaaatcctcatcagtggtaccccgcgaggggtttgaaactgctgatcctgaccacactatgtacagatactgtagc tgtaggtatcaatggaagttgtacagtgaatgctgactgtacagaatctgttcctaatacacagtgttctggtgactcag tgtgtgtctgtaatgacaactatgtatacagtacaaacaaatgtattactttgccaacagtgacaattacctcgtattgg tactttaaggtaataggagacaacatcattattccatgtacagtatcaggtgatgatgttacatcagcctattggacatt cacaagaagcggaactaaacataccttaccgtcagatgggctctctgatgggcgatactatgtatctgccttaccaaacc caggtctcaccatttctacacttaatacgacagatactggaacatacaaatgtaaagcctctaacgctgccggatggtca tcagacacggctactctttcagttataggtgatttaccaacagtcatcattcaatcacaatatataaagcttattggaga aaccattacaatctcatgtacagtatctggtacacctactgttacattagtagtgtgggcattcacacccacaggaggaa gtgaacaagttctgactgctggtggcagatatacaataactagtgtttatgaaatcacagaactcaagatatcatcactt gttatatcagattctgggagttatacatgtaaagccacaagtgctgctggacagtcatctaactccactatgcttattgt gggcggaggtatacttaatgtgacagtaactcctccaccaacaataaaaataggggaagatgtaacaatcagctgtgttt tggatggacaacccactgctactgggatccagtggaaaaggaatgattctgtgttagctaccaataacaatgctagatat accggaggatcagtatccattccctcactgaccataaaaaatgttacaaggagtgatgttggctcatatcaatgtctagc taccaatgatgcagggacaggagaaagtaataaagttactctcacaacaatggatcgtcagtttggagacagttgtggcg gtgatttaccttgtgatgacagtaagaacctactatgtgtaaccaaaaagtgtgagtgtaagaacacacactatcctcag aacaatgtctgctatacaagaaagcagttgaacgaggcctgtaatagtgttatgctatgtgtaaatgaacctcacgtgac atgtaatggaggtgtttgtgcatgtaatactgggtattatgatgacaatggtccaactacaggaggatcatgtcaagcta gaaaggtcctaggagatatatgttctaccacagtgttgtgtcttgagaacatacgatgtgctacagacaataaatgtaga tgttctgacaacttctatgatgacaacaaagatagctatgatgggatgtgtagaaataagccaggtcctccattggatgt aaaatgtccaatgagccctaaagacagatctttagagataacatgggatgctcctgctaatcctaatggtatcatacagt actataaagtatatgtgtactacgccattggatctacaaaggaagtaaaccagacaataggaacagttactacctttaat gtacagaaccttacaccagagtcgacttttggttttgctgtcagtgctgtgaatgatggtgatgaaagcattagaactag tgatatgacgactcgtaaatattgtacaacaaaagcaccatagagtaggaacttcacagtaaccttcaataagccagcca caccaaatggtagactgacaggatatgtactgtttgtgtatcaggagcagaagacaccacagaaatgtgttcaaaagatt ctatttagatgtactgattgtggtaaggactacacgttcatacatccgtatcaaagttgtgcaggaagggaggtatacca ggatatttcaaacctgccagacacatccacaatatcattcattgtggtggacctactaccctttatggattacacagtag aggcagcaggaatcaatgctgcaggagaaggcaatctggccaagctacagaacttcatcaaaacaggacaagaagctcca caaatatcaacagtacagaacatactaacaacagcctcaggtagagaacaagctcagacaacaacgtttgttgtagagct tactatagacttcctcaatgacaactcaagtggtcaggttgaatactatggcatcgcagtgtgtagaatagataaatata ctagacgtcacgtaatggcgtcatttgatcaaagatcgcaggaaatgatgacgtcatgcgtacacgtcgcgctaaacttt gtaactaaacctctccaatgtattttaagccagggacgacgtaaaagatccacgacattccagtatacaataggctctga gacatgtgctaataacacatattactgtaacggacccctgcctcccagaacaagcttcaagttgacaatgtcgcacaaga ataaggaggatacgtacacagatttgacaatacgaaacataaatcatacgcaatcactggatgaagcatatacttctctg cacatcagaactatcagacgaaacaggccaattcctgttaccaaatttctagtacaaaagatggaattagaagctgacag taaaagattactggccattgaattcaatgacctgacgtctttatcggtatctgtcccctgtaccaaggcaagccattcaa taactcgccataaaaacagatctcaaagtattataccaagtgacccacagcgactgaaacttggtgaaaaaagtgacaca actgaggactacattaatgcttctttaattcagattccattgatgtcagatcagtttgattgtgtagctacacaacatcc gttaccagaaaccaactcagacttctggcaaatgatctgggaacgcaacacatttttcattgtcatgctcaactcaattt ctgaatgtgagaatgtacagtactggccaatcgaagaaggtggtttaaaaacttatggtacttttactgttaaagttgtt gcctgcttttcctctggagaaagaagcatgcatcgagtgtttgaagtttcaaaggagcaataccatttcatttatgagtg tcttggtgcctacatcaccgataagttaggggatggtggttccatgacacgccaatctgtccaattcagcactctacagc ggtatgcgaatactaatgacaaggatgtttatgaacagataccctaa |
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Protein
| Protein ID | pfu_aug2.0_42.1_06805.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_42.1_06805.t1 MVNPHQWYPARGLKLLILTTLCTDTVAVGINGSCTVNADCTESVPNTQCSGDSVCVCNDNYVYSTNKCITLPTVTITSYW YFKVIGDNIIIPCTVSGDDVTSAYWTFTRSGTKHTLPSDGLSDGRYYVSALPNPGLTISTLNTTDTGTYKCKASNAAGWS SDTATLSVIGDLPTVIIQSQYIKLIGETITISCTVSGTPTVTLVVWAFTPTGGSEQVLTAGGRYTITSVYEITELKISSL VISDSGSYTCKATSAAGQSSNSTMLIVGGGILNVTVTPPPTIKIGEDVTISCVLDGQPTATGIQWKRNDSVLATNNNARY TGGSVSIPSLTIKNVTRSDVGSYQCLATNDAGTGESNKVTLTTMDRQFGDSCGGDLPCDDSKNLLCVTKKCECKNTHYPQ NNVCYTRKQLNEACNSVMLCVNEPHVTCNGGVCACNTGYYDDNGPTTGGSCQARKVLGDICSTTVLCLENIRCATDNKCR CSDNFYDDNKDSYDGMCRNKPGPPLDVKCPMSPKDRSLEITWDAPANPNGIIQYYKVYVYYAIGSTKEVNQTIGTVTTFN VQNLTPESTFGFAVSAVNDGDESIRTSDMTTRKYCTTKAPXSRNFTVTFNKPATPNGRLTGYVLFVYQEQKTPQKCVQKI LFRCTDCGKDYTFIHPYQSCAGREVYQDISNLPDTSTISFIVVDLLPFMDYTVEAAGINAAGEGNLAKLQNFIKTGQEAP QISTVQNILTTASGREQAQTTTFVVELTIDFLNDNSSGQVEYYGIAVCRIDKYTRRHVMASFDQRSQEMMTSCVHVALNF VTKPLQCILSQGRRKRSTTFQYTIGSETCANNTYYCNGPLPPRTSFKLTMSHKNKEDTYTDLTIRNINHTQSLDEAYTSL HIRTIRRNRPIPVTKFLVQKMELEADSKRLLAIEFNDLTSLSVSVPCTKASHSITRHKNRSQSIIPSDPQRLKLGEKSDT TEDYINASLIQIPLMSDQFDCVATQHPLPETNSDFWQMIWERNTFFIVMLNSISECENVQYWPIEEGGLKTYGTFTVKVV ACFSSGERSMHRVFEVSKEQYHFIYECLGAYITDKLGDGGSMTRQSVQFSTLQRYANTNDKDVYEQIP |
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