Gene
| Gene Model ID | pfu_aug2.0_421.1_04150 |
|---|---|
| Locus | scaffold421.1 : 180402 ... 189681 : + |
| To GenomeBrowser | scaffold421.1:180402..189681 |
| Genes list of scaffold | scaffold421.1 |
| Synonym | pfu_aug1.0_7928.1_53055 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| double-stranded rna-specific adenosine deaminase- partial | GO:0004000 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_421.1_04150.t1 | 3 | 1 | z-alpha | 3 | 63 | 1.4e-13 | 50.4 | 1.6e-10 | 4.9e-07 | 29.4 |
| pfu_aug2.0_421.1_04150.t1 | 3 | 2 | z-alpha | 107 | 160 | 1.4e-13 | 50.4 | 5.9e-07 | 0.0017 | 18.0 |
| pfu_aug2.0_421.1_04150.t1 | 3 | 3 | z-alpha | 655 | 671 | 1.4e-13 | 50.4 | 2.3 | 6700.0 | -3.1 |
| pfu_aug2.0_421.1_04150.t1 | 1 | 1 | dsrm | 752 | 817 | 1.2e-08 | 35.3 | 1.2e-11 | 3.4e-08 | 33.9 |
| pfu_aug2.0_421.1_04150.t1 | 1 | 1 | A_deamin | 886 | 1019 | 3.0e-27 | 95.8 | 2.6e-30 | 7.6e-27 | 94.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_421.1_04150.t1 | gi|556979270|ref|XP_005996551.1| | PREDICTED: double-stranded RNA-specific adenosine deaminase [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_421.1_04150.t1 | gi|637379990|ref|XP_008123605.1| | PREDICTED: double-stranded RNA-specific adenosine deaminase-like, partial [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_421.1_04150.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_421.1_04150.t1 atggctgcaagtttgtctgcacaaattatcaattttatcctgtcccagggcaatgggacttgcaatttacatgatattgt taaagggaccagaaatgacaaaaggttgattaacaaagaactctacaaattgcggagacaaggggcagttgaaaaagtga atgattcccctcccgtgtggtcagtttgttcccatggcggtaatgagagtgttcgagcttttcctaaatcaaatcttcga tcaaaaggggcagtaacaaaaaagaaatggggaacttcacggaaaccgtttgccaaaccaccaaatcaagaattaatccc aaaaattgtgtcgtatctgcaatcaactgaccaagcagtcagaacgatagatctggctaaacattgtgggttccgcacct ccacagaaataaaccccactttgtataacttgtgtcggagaaatctgataagacaagcatcacaccagccagctttatgg tgcagagtcagagatgacgggtcaggctttaatacatacaatacaggggaggagtatggacatgatcatgtaggaagtat ggatactgaagatgttgagaatcaaagagatgggtttgaagccactgcccaaagctttccccatagctctgattttgctg aaggattaaacatttctaataatgctcatgttggtgattggtcagatcagccagctagagattccacaagtaacatgaac agtgtcgatgtctcatctaatgatacacgtagaaatgactctgtaaatatagccgtcaaaaaaatacccgttaagtcagt cagcagagaagaaggaacgtcaagttctagtgatatagacagattgttatttgccatgctgctctgcccgaactacaaag caaaatccttcgtcattggtacaaaaatgaagccgcaagaaaacttaaaaacggtccaaaatatacttgaagaatgtcta agacgtggatttgttgatacaaatgaactactttggatgctgacagaagaaggagaaaaatatatcaaaacgaaaataga acaggatgctctaccatctgcaccgagacaaaatattgccccaccacctgctagagatttgtcgaagaaatttattggcc ctcctcctacaccatttgacattgtcaaatctggacagtcatattcttcaggaagtgcccctggaagttatcaaggaaat atatctacactgaagaacagttcaaatgtaggtgcacctcgtaatctgacaggtgcaggtgctatggcaccttcatcatt accaccaccttcagcacctgggtcgtaccagccttcaacctccaaaacttcctctatttttggtgcaggtgctatggcac cttcgtctcttccgccgtctttagcaccgggttcttatcagccgtcaacttcaataaattcttcagctatgggatacaga actgataataacagatcaccgtttagttcaagtccatcgtcattaacgtcgtcatcatcagatataccatcacttatgtc catcgatgtcaaacctcccccaagtaaacctggggcttattgtgcaccatcatttatgcagcatgaaggttacacaagca gtccaggctcatattcaatgaacatgccatctagacagagcattcagtcaacatcattgccttcaaattcaaacagtttt actggtcaatcccagaataatgactactatacctcaatgcagacaagaggtattgatcggaacaaaggaagcagtagtac aagcttcaaaccgcctcctccacctatggagttactcagtgaaaaaatgaaaaagacagacatctcgcctccaaactctt actcaagcccagcgggattctctcaaccagtatgccaaagtatgatgtcaacaaaccaaggatcatctataggtcaccct caaagtaagccatctcttggagggggacattccatgccagttgtgtgtgaaacatttgcaaatgcaggcatacaaaaatt gctaaatgctgctgcaaaaggttttcatcagtccaaagcatcttcaacagggaactctggaactcaaatggcccaaccaa gtagtggtaattttctacaaggtcaaggtcaaatttcaatgcaaagtcaaggtcattatccgaatcagcctcagtctttg cctgcaatgccaagcccagcaatgacaagtttaccatcaggccctgccagtataggaatcagctctgaaagttttgcagc actaagtaaaaatcctgtcagcgctttaatggagtatgcccaatcaaggaagagtgtagctacgattgaggtcataagac aaagtgggccatcccataaaccaaggtttgtgatgggagcatttattagtgggaagcagctgtcagaagtgacgtgtaca aacaagaaagatggcagaaaggaagcagccgataaagccctgagggcactgatagctgccgggcagtataaagtggactc tgctccttccaagcctcagattcctgctagtcagatgacgcactttgacaaaatggcagccctgactcaccaggcattta acacactctcagtcacgatagctgagagtttctctggacgtaaagttatagctggattggtcatgaaaacaccacaagat cctggtactgttattgccattggtacaggaaaccgttgtatcactggcacagagctaagtttagaaggcaacaccgtcaa cgattctcatgcagagattatcaccagacggggatttattagaaattccctagtgacattaaccaatcaaatcaggttcc tatacaagcagcttttgtcatacgaacccagcaaatcccaacagatgtttgtaccgtcttcgtctggtaaactgcgtgtt agggacggtatttccttccacctgtatatatctacagctccatgtggggacggtgcactattctcatcaagggatgctgc agccaccagtgccccaccacagaacgtgaagggaatggaacatgatccagcctttactagtgatgtccaggggttattac gaacaaaaattgagggaggtcagtatcaaaatattgttttatga |
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Protein
| Protein ID | pfu_aug2.0_421.1_04150.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_421.1_04150.t1 MAASLSAQIINFILSQGNGTCNLHDIVKGTRNDKRLINKELYKLRRQGAVEKVNDSPPVWSVCSHGGNESVRAFPKSNLR SKGAVTKKKWGTSRKPFAKPPNQELIPKIVSYLQSTDQAVRTIDLAKHCGFRTSTEINPTLYNLCRRNLIRQASHQPALW CRVRDDGSGFNTYNTGEEYGHDHVGSMDTEDVENQRDGFEATAQSFPHSSDFAEGLNISNNAHVGDWSDQPARDSTSNMN SVDVSSNDTRRNDSVNIAVKKIPVKSVSREEGTSSSSDIDRLLFAMLLCPNYKAKSFVIGTKMKPQENLKTVQNILEECL RRGFVDTNELLWMLTEEGEKYIKTKIEQDALPSAPRQNIAPPPARDLSKKFIGPPPTPFDIVKSGQSYSSGSAPGSYQGN ISTLKNSSNVGAPRNLTGAGAMAPSSLPPPSAPGSYQPSTSKTSSIFGAGAMAPSSLPPSLAPGSYQPSTSINSSAMGYR TDNNRSPFSSSPSSLTSSSSDIPSLMSIDVKPPPSKPGAYCAPSFMQHEGYTSSPGSYSMNMPSRQSIQSTSLPSNSNSF TGQSQNNDYYTSMQTRGIDRNKGSSSTSFKPPPPPMELLSEKMKKTDISPPNSYSSPAGFSQPVCQSMMSTNQGSSIGHP QSKPSLGGGHSMPVVCETFANAGIQKLLNAAAKGFHQSKASSTGNSGTQMAQPSSGNFLQGQGQISMQSQGHYPNQPQSL PAMPSPAMTSLPSGPASIGISSESFAALSKNPVSALMEYAQSRKSVATIEVIRQSGPSHKPRFVMGAFISGKQLSEVTCT NKKDGRKEAADKALRALIAAGQYKVDSAPSKPQIPASQMTHFDKMAALTHQAFNTLSVTIAESFSGRKVIAGLVMKTPQD PGTVIAIGTGNRCITGTELSLEGNTVNDSHAEIITRRGFIRNSLVTLTNQIRFLYKQLLSYEPSKSQQMFVPSSSGKLRV RDGISFHLYISTAPCGDGALFSSRDAAATSAPPQNVKGMEHDPAFTSDVQGLLRTKIEGGQYQNIVL |
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