Gene
| Gene Model ID | pfu_aug2.0_422.1_07492 |
|---|---|
| Locus | scaffold422.1 : 36965 ... 51595 : - |
| To GenomeBrowser | scaffold422.1:36965..51595 |
| Genes list of scaffold | scaffold422.1 |
| Synonym | pfu_aug1.0_514.1_43713 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| lim homeobox protein | GO:0003677 GO:0008152 GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_422.1_07492.t1 | 2 | 1 | LIM | 20 | 76 | 4.7e-31 | 106.6 | 4.2e-19 | 1.3e-15 | 57.2 |
| pfu_aug2.0_422.1_07492.t1 | 2 | 2 | LIM | 82 | 136 | 4.7e-31 | 106.6 | 2.1e-18 | 6.4e-15 | 54.9 |
| pfu_aug2.0_422.1_07492.t1 | 1 | 1 | Homeobox | 215 | 270 | 4.3e-15 | 55.0 | 2.6e-18 | 7.8e-15 | 54.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_422.1_07492.t1 | gi|676457966|ref|XP_009054822.1| | hypothetical protein LOTGIDRAFT_232365 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_422.1_07492.t1 | gi|696966743|ref|XP_009554125.1| | PREDICTED: LOW QUALITY PROTEIN: insulin gene enhancer protein ISL-1 [Cuculus canorus] | 0.0 |
| pfu_aug2.0_422.1_07492.t1 | gi|390339027|ref|XP_781774.3| | PREDICTED: insulin gene enhancer protein ISL-1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_422.1_07492.t1 | gi|259013450|ref|NP_001158468.1| | ISL LIM homeobox 1 [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_422.1_07492.t1 | gi|242009361|ref|XP_002425456.1| | LIM/homeobox protein Lhx9, putative [Pediculus humanus corporis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_422.1_07492.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_422.1_07492.t1 atgactgcagacactcagcctcctccgcagccaaaaagaaagcggcgcgtgtctgtttgtgtgggatgtgggtcccagat ccaggatcagttcatcttgagggtggccccggacttggagtggcacgcctcatgtctcaagtgtgcggactgtaaccaac accttgatgaaagttgtacctgcttcgtgaaggacggaaagacgtactgtaggagggactatactagaatatttggagct aaatgtgggaagtgcaatcaatcttttggtaaaagtgactttgtaatgagggcaaggaataaagtatatcatatagactg tttccggtgtgtggcatgcagcagacaactcatacccggggatgaattcgctatcagagacgatgaactattttgtaaag cggatcacgacgtcgtggaaaggtcctgtagtaaggaaaacggaaacggaagtagtgaagaagacagtccaaaaagttca aagatcaggaaaataaacaatgacgataacaacaacaataataattctaatgaaatttccaaaaatggattgcatctagc tggtagagcagagcaagtatcgagtggaaaaggaggcggtttacgtagtcatagtattcacaaaaatgaacaaaagccaa ctcgtgtacgaactgttcttaacgagaaacaattacatactcttagaacatgttataatgcaaacccaagaccagacgcc ttaatgaaagaacagttagtagaaatgacaggtctaagcccgagggtaatccgagtgtggttccagaacaagcgctgcaa agacaaaaagagaagcatcatgatgaaacagattcaacagcaacagcaggaaaagaatggaggtcggcttcatggtcctc tacaaggcgttccaatggtagcgtccagtcctgtacgtcatgagagtcccatgcaggcgaatgctgtagaagttcagagt taccaacctccatggaaggcccttagtgacttcgccatgcaaagtgaattagaacacccgcctttccagcaattgatgaa ttcatttgataccatggattcagatgacacatctccatatccaaatgaaatttacagcgacggatacggaagtgcgtgga taagtggagaaatgcatgatgggaatatatcagactctgaatgtggggaatccccgtccgaaatgtccagtcctttaagt caatga |
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Protein
| Protein ID | pfu_aug2.0_422.1_07492.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_422.1_07492.t1 MTADTQPPPQPKRKRRVSVCVGCGSQIQDQFILRVAPDLEWHASCLKCADCNQHLDESCTCFVKDGKTYCRRDYTRIFGA KCGKCNQSFGKSDFVMRARNKVYHIDCFRCVACSRQLIPGDEFAIRDDELFCKADHDVVERSCSKENGNGSSEEDSPKSS KIRKINNDDNNNNNNSNEISKNGLHLAGRAEQVSSGKGGGLRSHSIHKNEQKPTRVRTVLNEKQLHTLRTCYNANPRPDA LMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSIMMKQIQQQQQEKNGGRLHGPLQGVPMVASSPVRHESPMQANAVEVQS YQPPWKALSDFAMQSELEHPPFQQLMNSFDTMDSDDTSPYPNEIYSDGYGSAWISGEMHDGNISDSECGESPSEMSSPLS Q |
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