Gene
| Gene Model ID | pfu_aug2.0_423.1_10757 |
|---|---|
| Locus | scaffold423.1 : 127280 ... 133098 : - |
| To GenomeBrowser | scaffold423.1:127280..133098 |
| Genes list of scaffold | scaffold423.1 |
| Synonym | pfu_aug1.0_5420.1_59767 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| basement membrane-specific heparan sulfate proteoglycan core | GO:0001501 GO:0031012 GO:0044421 GO:0048513 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_423.1_10757.t1 | 1 | 1 | Laminin_G_2 | 45 | 177 | 3.1e-25 | 88.6 | 5.7e-29 | 4.2e-25 | 88.2 |
| pfu_aug2.0_423.1_10757.t1 | 1 | 1 | Laminin_G_1 | 45 | 177 | 4.2e-25 | 88.2 | 8.1e-29 | 6.0e-25 | 87.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_423.1_10757.t1 | gi|260815116|ref|XP_002602320.1| | hypothetical protein BRAFLDRAFT_282197 [Branchiostoma floridae] | 4.0e-37 |
| pfu_aug2.0_423.1_10757.t1 | gi|674091852|ref|XP_008854034.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Nannospalax galili] | 2.0e-36 |
| pfu_aug2.0_423.1_10757.t1 | gi|335290646|ref|XP_003356232.1| | PREDICTED: basement membrane-specific heparan sulfate proteoglycan core protein-like [Sus scrofa] | 1.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_423.1_10757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_423.1_10757.t1 atgggcaggaactgtgaagctgatgtagtccttggaactaacatagaggtgaacagggatggttttgtagaattcaattc gagtgttttcacaaggaaccaaggccaagacaaagaaataattaaattaaccataaaaacaacgagtcgtagtgggcttt tattctggagagggcagtcgagcccaggtcagcccatacagtccggggattatctgtccatagggcttcaagatggattt gctgtgtatagctatgagttaggaacaggtcctgccaatttaatgtccaaacagaggatcaacgacggctatgcccataa tataaccgctctacgtctcggaaatgtgggaagcctgattattgacgacaattacatgaacgccatgaacgggtcatcgg caggagacttacatgtactgaataccaaaggaaacatatatatagggggtgttccattagtgggatccatgacggggaga aaatattcagaaaatttctccggatgtatatcaaatatttatctccaggacaagggacccctcagagtcccagaagacgc tatcggtggatttaacgttagaccgtgtctgaacagaaaataa |
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Protein
| Protein ID | pfu_aug2.0_423.1_10757.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_423.1_10757.t1 MGRNCEADVVLGTNIEVNRDGFVEFNSSVFTRNQGQDKEIIKLTIKTTSRSGLLFWRGQSSPGQPIQSGDYLSIGLQDGF AVYSYELGTGPANLMSKQRINDGYAHNITALRLGNVGSLIIDDNYMNAMNGSSAGDLHVLNTKGNIYIGGVPLVGSMTGR KYSENFSGCISNIYLQDKGPLRVPEDAIGGFNVRPCLNRK |
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