Gene
| Gene Model ID | pfu_aug2.0_423.1_10759 |
|---|---|
| Locus | scaffold423.1 : 252207 ... 258828 : - |
| To GenomeBrowser | scaffold423.1:252207..258828 |
| Genes list of scaffold | scaffold423.1 |
| Synonym | pfu_aug1.0_28982.1_55283 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase traip | GO:0005488 GO:0009987 GO:0016881 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_423.1_10759.t1 | 1 | 1 | zf-RING_2 | 4 | 48 | 1.5e-14 | 53.4 | 4.6e-17 | 3.2e-14 | 52.4 |
| pfu_aug2.0_423.1_10759.t1 | 1 | 1 | zf-rbx1 | 4 | 48 | 9.4e-09 | 35.2 | 3.9e-11 | 2.7e-08 | 33.7 |
| pfu_aug2.0_423.1_10759.t1 | 1 | 1 | zf-C3HC4_3 | 4 | 53 | 1.1e-08 | 34.6 | 3.4e-11 | 2.4e-08 | 33.5 |
| pfu_aug2.0_423.1_10759.t1 | 1 | 1 | zf-RING_5 | 4 | 48 | 2.7e-07 | 30.1 | 8.9e-10 | 6.3e-07 | 29.0 |
| pfu_aug2.0_423.1_10759.t1 | 1 | 1 | zf-C3HC4_2 | 5 | 47 | 3.1e-11 | 43.0 | 1.1e-13 | 7.6e-11 | 41.8 |
| pfu_aug2.0_423.1_10759.t1 | 1 | 1 | zf-C3HC4 | 5 | 47 | 1.8e-08 | 33.9 | 9.1e-11 | 6.4e-08 | 32.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_423.1_10759.t1 | gi|676495658|ref|XP_009066960.1| | hypothetical protein LOTGIDRAFT_64498, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_423.1_10759.t1 | gi|759133255|ref|XP_011363032.1| | PREDICTED: E3 ubiquitin-protein ligase TRAIP isoform X1 [Pteropus vampyrus] | 9.94922e-44 |
| pfu_aug2.0_423.1_10759.t1 | gi|667267749|ref|XP_008569770.1| | PREDICTED: E3 ubiquitin-protein ligase TRAIP [Galeopterus variegatus] | 1.00053e-42 |
| pfu_aug2.0_423.1_10759.t1 | gi|657575894|ref|XP_008291705.1| | PREDICTED: E3 ubiquitin-protein ligase TRAIP [Stegastes partitus] | 1.99965e-42 |
| pfu_aug2.0_423.1_10759.t1 | gi|683914809|ref|XP_009089246.1| | PREDICTED: E3 ubiquitin-protein ligase TRAIP [Serinus canaria] | 1.99965e-42 |
Transcript
| Transcript ID | pfu_aug2.0_423.1_10759.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_423.1_10759.t1 atgagagcacactgtgttatatgttccgaccagttcatagatgatgagaaggtagccatcactgccttgccatgtggtca cacttttcacggtacctgcattgaaaaatggctgcactctaataactcttgtcccagctgtcgcaatcgtgtggaacgta gtaaagtcgtatggaggctcttctttgactgtgatgccgatcacgaggaaaacactgattgtggaagactcaataacaaa atcagggaattgcaagtgtcgctatcagagaaagaaaaggcggctagtgacgtacagaaagataatgactcattactgaa gaaattaaaaggtgtcgaaaaggagaagaaacaattggacaattccttgcgctcggaaaggacagagatagaatccttga agaagcagcttcagtattatcagtattcacagaatagtctggataaagagaaggaggagtgtcggaaaatcaaacgaaaa ttcatagaatatcagaacattgagaaacttctaacaggttgtgaaaaggacatgcagcacatgttagcgaaccatcgtga cggtcatgagagggatgtggaatcccttgtgaagtacgtatccatgctgaaaagggaatacgaaaaggtgaaagtggaga aaaaggctattaaaggagaatttgacaaatataaacgggaaaatttctccaaagacactgacttaaaagagtgcaaaaca cagatgaaacttttaaacactcagttggttaggtcggaagaagacttaaagacggcggaaagagaaaaggaacttttgaa gaagcatgtgctgaatctacaaagtgctataaaaagtcctcgaggattgtcctcagccgcgtccatagaaaacctttgcc gtacaccaatgttaaactctactgctaccacaccggatttgtttaatgattccgcattcgataaaaaagtggatttaaca tccccttgttctcctgaaattctcggtagcgaggcaccaaagtcaagtacgaacaaacggactcaaagtgacgaaaatca agtgaaatatctcaaaataagctcagcgtccagttcaactcaaaatccagctaaacgtccgaagagggaaatggacgaca tcagtaacttaacgcacttgggtagctttaatattttcaagaagaaatcgggtgtgggagattatagcactaaagtgagg acagggtttaacggactcgggtgtgtagagacattcacgcaaccaacggcacgaccgaaactgcaggtcagcaaaaagtc ggccagtcgtaccagtgtaaatgggaagaaaatcaaagtcccgtccctacccactctggacggctttatcaatttggaat aa |
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Protein
| Protein ID | pfu_aug2.0_423.1_10759.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_423.1_10759.t1 MRAHCVICSDQFIDDEKVAITALPCGHTFHGTCIEKWLHSNNSCPSCRNRVERSKVVWRLFFDCDADHEENTDCGRLNNK IRELQVSLSEKEKAASDVQKDNDSLLKKLKGVEKEKKQLDNSLRSERTEIESLKKQLQYYQYSQNSLDKEKEECRKIKRK FIEYQNIEKLLTGCEKDMQHMLANHRDGHERDVESLVKYVSMLKREYEKVKVEKKAIKGEFDKYKRENFSKDTDLKECKT QMKLLNTQLVRSEEDLKTAEREKELLKKHVLNLQSAIKSPRGLSSAASIENLCRTPMLNSTATTPDLFNDSAFDKKVDLT SPCSPEILGSEAPKSSTNKRTQSDENQVKYLKISSASSSTQNPAKRPKREMDDISNLTHLGSFNIFKKKSGVGDYSTKVR TGFNGLGCVETFTQPTARPKLQVSKKSASRTSVNGKKIKVPSLPTLDGFINLE |
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