Gene
| Gene Model ID | pfu_aug2.0_424.1_14134 |
|---|---|
| Locus | scaffold424.1 : 16816 ... 31146 : + |
| To GenomeBrowser | scaffold424.1:16816..31146 |
| Genes list of scaffold | scaffold424.1 |
| Synonym | pfu_aug1.0_11328.1_46363 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_424.1_14134.t1 | 13 | 1 | Ribosomal_S4e | 19 | 46 | 5.2e-06 | 26.0 | 0.0054 | 27.0 | 4.5 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 2 | Ribosomal_S4e | 59 | 82 | 5.2e-06 | 26.0 | 0.021 | 110.0 | 2.6 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 3 | Ribosomal_S4e | 99 | 126 | 5.2e-06 | 26.0 | 0.0021 | 11.0 | 5.8 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 4 | Ribosomal_S4e | 130 | 155 | 5.2e-06 | 26.0 | 0.016 | 80.0 | 3.0 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 5 | Ribosomal_S4e | 149 | 177 | 5.2e-06 | 26.0 | 0.019 | 92.0 | 2.8 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 6 | Ribosomal_S4e | 179 | 243 | 5.2e-06 | 26.0 | 0.0079 | 39.0 | 4.0 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 7 | Ribosomal_S4e | 236 | 258 | 5.2e-06 | 26.0 | 0.042 | 210.0 | 1.6 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 8 | Ribosomal_S4e | 265 | 289 | 5.2e-06 | 26.0 | 0.011 | 54.0 | 3.5 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 9 | Ribosomal_S4e | 286 | 309 | 5.2e-06 | 26.0 | 0.0056 | 28.0 | 4.4 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 10 | Ribosomal_S4e | 325 | 348 | 5.2e-06 | 26.0 | 0.012 | 61.0 | 3.3 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 11 | Ribosomal_S4e | 356 | 384 | 5.2e-06 | 26.0 | 0.0028 | 14.0 | 5.4 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 12 | Ribosomal_S4e | 395 | 424 | 5.2e-06 | 26.0 | 0.0031 | 15.0 | 5.3 |
| pfu_aug2.0_424.1_14134.t1 | 13 | 13 | Ribosomal_S4e | 445 | 464 | 5.2e-06 | 26.0 | 0.12 | 580.0 | 0.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_424.1_14134.t1 | gi|672086847|ref|XP_008771254.1| | PREDICTED: involucrin-like [Rattus norvegicus] | 0.0 |
| pfu_aug2.0_424.1_14134.t1 | gi|167392912|ref|XP_001740347.1| | hypothetical protein [Entamoeba dispar SAW760] | 6.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_424.1_14134.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_424.1_14134.t1 atgctagctacaaagtcatcaaggaaactaatgatagcttcaaggtcatcaaggaaactaaatgatagcttcaaagtcat caaggaaactaatggtaacttcaaggtcatcaaggatacaaatgataactcaaaggtcatgaagaaaactaatgatagct tcaaggtcatcaaagaaactaatgatagcttcaaggtcatcaaggaaactaaagataacttcaaggtcatcaaaaataca aatgatagcttcaatgtcacccacgaatacaatgctagcttcaaggtcatcaagaaaactaatgatagcttcaaggtcat caaggacacaaataatagcttcaaggtcattcaggaaaacaatgctagcttcaaaatcattatggaaaataataacttca aggtcatcaaggacacaaataatagcttcaaggtcattcaggaaaacaatgctagcttcaaaatcattatggaaaataat gatagcttcaaggttatcaaggaaactaatgatagctccaaggttatcaaggcaacaaatgatagctttaaggtcatcaa ggaaattaatgatgacttcaaagtcatcaaggaaactaatgatgacttcaaagtcatcaaggaagctatgatagctgcaa ggtcatcaaagaaactaataatagctcttagatcatcaaggaaactaatgatagcttcaaggcaaactaatgatagcttc aaggtcatgaaggaaacaaatgattacttcaaggtcatcaaggaaactaatgatagcttcaaggacatcaagaaaattaa tgatagcttcagggtcatgaaggaaacaaatgattacttcaaggtgttcaaagaaactaatgatagcttcaaggtcatca aggaaactaatgatagattcaaggtaatcaaggaaactaatgataacttcaaggtcatcaaggaaactaatgatagcttc aaggacatcaagaaaattaatgatagcttcagggtcatgaaggaaacaaatgattacttcaaggtgttcaaagaaaataa tgatagcttcaaggtcatcaaggaaactaatgatagcttcaaggtaatcaaggaaactaatgataacttcaaggtcatca aggaaaatgatgctagcttcaaggtcatcaaggaaactaatgatagcttcaaggttatcaaggaaactaatgattacttc aaggtcatcaaggaaactaaggatagcttcaaggtcatccaggaatacaatgctagcttcaaggtcatcaaggatacaaa tgatagcttaaaggtcatccaagaaaacaatgcttacttcaatgtcatcaaggaaacgaatgattacttcaaggtcatca aggaaactaataatagcttcaaggtcatcaaggatacctga |
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Protein
| Protein ID | pfu_aug2.0_424.1_14134.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_424.1_14134.t1 MLATKSSRKLMIASRSSRKLNDSFKVIKETNGNFKVIKDTNDNSKVMKKTNDSFKVIKETNDSFKVIKETKDNFKVIKNT NDSFNVTHEYNASFKVIKKTNDSFKVIKDTNNSFKVIQENNASFKIIMENNNFKVIKDTNNSFKVIQENNASFKIIMENN DSFKVIKETNDSSKVIKATNDSFKVIKEINDDFKVIKETNDDFKVIKEAMIAARSSKKLIIALRSSRKLMIASRQTNDSF KVMKETNDYFKVIKETNDSFKDIKKINDSFRVMKETNDYFKVFKETNDSFKVIKETNDRFKVIKETNDNFKVIKETNDSF KDIKKINDSFRVMKETNDYFKVFKENNDSFKVIKETNDSFKVIKETNDNFKVIKENDASFKVIKETNDSFKVIKETNDYF KVIKETKDSFKVIQEYNASFKVIKDTNDSLKVIQENNAYFNVIKETNDYFKVIKETNNSFKVIKDT |
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