Gene
| Gene Model ID | pfu_aug2.0_4240.1_02588 |
|---|---|
| Locus | scaffold4240.1 : 2479 ... 10115 : - |
| To GenomeBrowser | scaffold4240.1:2479..10115 |
| Genes list of scaffold | scaffold4240.1 |
| Synonym | pfu_aug1.0_36021.1_48215 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| f-box wd repeat-containing protein 2 | GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_4240.1_02588.t1 | 1 | 1 | F-box-like | 71 | 111 | 4.6e-07 | 29.4 | 1.4e-10 | 1.0e-06 | 28.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_4240.1_02588.t1 | gi|637354986|ref|XP_003227644.2| | PREDICTED: F-box/WD repeat-containing protein 2 [Anolis carolinensis] | 4.0e-13 |
| pfu_aug2.0_4240.1_02588.t1 | gi|410903358|ref|XP_003965160.1| | PREDICTED: F-box/WD repeat-containing protein 2 [Takifugu rubripes] | 5.0e-13 |
| pfu_aug2.0_4240.1_02588.t1 | gi|156365498|ref|XP_001626682.1| | predicted protein [Nematostella vectensis] | 4.0e-12 |
| pfu_aug2.0_4240.1_02588.t1 | gi|625264209|ref|XP_007623558.1| | PREDICTED: F-box/WD repeat-containing protein 2 isoform X4 [Cricetulus griseus] | 6.0e-12 |
| pfu_aug2.0_4240.1_02588.t1 | gi|13277930|gb|AAH03834.1| | Fbxw2 protein [Mus musculus] | 9.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_4240.1_02588.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4240.1_02588.t1 atgtcaaacaatgataccgccagcactcgtgtgacctctgaccctgcagacttcaaagattggctgacatctctgacaga atccttcaagtccctgaccccaggacagaagaccgacaccctgaaagccttactggaccaatgtgggagtgaacagctat gttatcttacccaagtctatctgccgactgtgtgtcaggtagattttattgccttactacccagggaagtggccatcaaa gtgctgaagtatttggatggagaaatccttgaggatatttgcctggtcagcaaatcatggtacaacttaataaagagcag tgcagacctgtggctccatcaaaactggaaagagggaggagtacgatggaaaggcagccatattgaatctgtggacgctc acaaaatgtggagacgacaaaggcagctgagaatgcagttttgtgacgagaagttgatgaagcgcgttaatttctgtcca ggcgacgatatgacttacagagtgaaatgtatgcattacagatatccacttatagctacatgtagtgaggacaggagagt ctattttctttcattttacaaagttgagactgattttaagataaattctgtggcggttagattggagagagaagtaacga ttcccaatttcatacaggaaaacgggatgttagttggagtgggtagaagatttgcagtgtttcatgtcgttgatgacaga agttttaacattggctcatttatatgtgtgtacgacatggaaacggaggacttgttttctacgatacaagttccacatga aagttattatggtgagccgccatgtctgggagacgcacattggctggatggatttggcgaatgtaaaagccttttctatg ttgccgtagtgatacctgaaaactttacaattacgctttactatacagacagaagtaaaaaggacattactataaaccat gagacatga |
|
Protein
| Protein ID | pfu_aug2.0_4240.1_02588.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_4240.1_02588.t1 MSNNDTASTRVTSDPADFKDWLTSLTESFKSLTPGQKTDTLKALLDQCGSEQLCYLTQVYLPTVCQVDFIALLPREVAIK VLKYLDGEILEDICLVSKSWYNLIKSSADLWLHQNWKEGGVRWKGSHIESVDAHKMWRRQRQLRMQFCDEKLMKRVNFCP GDDMTYRVKCMHYRYPLIATCSEDRRVYFLSFYKVETDFKINSVAVRLEREVTIPNFIQENGMLVGVGRRFAVFHVVDDR SFNIGSFICVYDMETEDLFSTIQVPHESYYGEPPCLGDAHWLDGFGECKSLFYVAVVIPENFTITLYYTDRSKKDITINH ET |
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